Parental gene:

Rnf4, ENSMUSG00000029110

Aliases:Rnf4, AU018689, Gtrgeo8
Description:ring finger protein 4 [Source:MGI Symbol;Acc:MGI:1201691]
Organism:Mouse (Mus musculus)
Coordinates:5:34336288..34355629(+)


>ENSMUSG00000029110
ATGAGTACAAGAAATCCTCAAAGAAAGCGGCGTGGTGGAACTGTGAATTCTAGACAAACCCAGAAGCGAACTCGGGAAAC
AACTTCGACCCCTGAGGTTTCCTTGGAAACAGAACCCATAGAACTTGTGGAAACTGTTGGAGATGAAATTGTGGACCTCA
CCTGTGAATCTTTAGAGCCCGTGGTTGTGGACCTGACTCACAATGACTCTGTTGTGATTGTTGAAGAAAGGAGAAGGCCA
AGGAGAAATGGGAGGAGGTTGCGCCAAGACCATGCTGACAGCTGTGTGGTGAGCAGTGATGATGAGGAGCTGTCTAGGGA
CAAAGATGTGTACGTGACTACCCATACTCCTCGAAGCACCAAGGATGATGGAGCTACTGGACCCAGGCCCTCAGGTACCG
TCAGTTGTCCTATCTGTATGGATGGATACTCTGAGATTGTGCAGAATGGGCGTCTCATTGTTTCTACAGAATGTGGCCAC
GTCTTCTGTAGCCAGTGCCTCCGTGATTCCCTTAAGAATGCTAACACTTGCCCAACTTGTAGGAAAAAGATCAACCATAA
GCGGTACCACCCCATTTATATATGA

Library Parental gene expression (RPM)
SRP007412_brain 70 .42 RPM
SRP007412_cerebellum 67 .30 RPM
SRP007412_heart 31 .66 RPM
SRP007412_kidney 60 .73 RPM
SRP007412_liver 83 .51 RPM
SRP007412_testis 166 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014366 possible_ortholog 1 retrogene
retro_amel_77,
Canis familiaris ENSCAFG00000014856 possible_ortholog 1 retrogene
retro_cfam_25,
Equus caballus ENSECAG00000024877 possible_ortholog 1 retrogene
retro_ecab_33,
Homo sapiens ENSG00000063978 ortholog_one2one 1 retrogene
retro_hsap_319,
Gorilla gorilla ENSGGOG00000015149 ortholog_one2one 2 retrogenes
retro_ggor_1144, retro_ggor_345,
Loxodonta africana ENSLAFG00000007382 possible_ortholog 1 retrogene
retro_lafr_44,
Microcebus murinus ENSMICG00000001767 ortholog_one2one 1 retrogene
retro_mmur_1265,
Nomascus leucogenys ENSNLEG00000000160 ortholog_one2many 2 retrogenes
retro_nleu_1713, retro_nleu_37,
Oryctolagus cuniculus ENSOCUG00000004998 ortholog_one2many 2 retrogenes
retro_ocun_1566, retro_ocun_162,
Otolemur garnettii ENSOGAG00000010776 ortholog_one2one 1 retrogene
retro_ogar_2121,
Pongo abelii ENSPPYG00000025865 ortholog_one2many 2 retrogenes
retro_pabe_1240, retro_pabe_36,
Pteropus vampyrus ENSPVAG00000017017 ortholog_one2one 1 retrogene
retro_pvam_167,
Ictidomys tridecemlineatus ENSSTOG00000011101 ortholog_one2many 2 retrogenes
retro_itri_1108, retro_itri_171,
Tarsius syrichta ENSTSYG00000011244 ortholog_one2one 1 retrogene
retro_tsyr_1606,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_522 86.84 78.35
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Download FASTA sequences of all ENSMUSG00000029110 retrocopies