Parental gene:

RNF4, ENSG00000063978

Aliases:RNF4, SLX5, SNURF
Description:ring finger protein 4 [Source:HGNC Symbol;Acc:10067]
Organism:Human (Homo sapiens)
Coordinates:4:2463946..2627047(+)


>ENSG00000063978
ATGAGTACAAGAAAGCGTCGTGGTGGAGCAATAAATTCTAGACAAGCTCAGAAGCGAACTCGGGAAGCAACCTCCACCCC
CGAGATCTCCTTGGAAGCAGAACCCATAGAACTCGTGGAAACTGCTGGAGATGAAATTGTGGACCTCACTTGTGAATCTT
TAGAGCCTGTGGTGGTTGATCTGACTCACAATGACTCTGTTGTGATTGTTGACGAAAGAAGAAGACCAAGGAGGAATGCT
AGGAGGCTGCCCCAGGACCATGCTGACAGCTGTGTGGTGAGCAGTGACGATGAGGAGTTGTCCAGGGACAGAGACGTATA
TGTGACTACCCATACTCCCAGAAACGCCAGGGATGAGGGCGCTACAGGCCTCAGGCCCTCAGGTACTGTCAGTTGTCCCA
TCTGCATGGACGGATACTCAGAGATCGTGCAGAATGGACGTCTCATCGTTTCCACAGAATGCGGCCATGTCTTCTGTAGC
CAGTGCCTCCGTGATTCCCTGAAGAATGCTAATACTTGCCCAACTTGTAGGAAAAAGATCAACCACAAACGGTACCACCC
CATTTATATATGA

Library Parental gene expression (RPM)
bodymap2_liver 25 .73 RPM
bodymap2_lung 43 .14 RPM
bodymap2_breast 38 .68 RPM
bodymap2_adipose 66 .27 RPM
bodymap2_adrenal 81 .65 RPM
bodymap2_skeletal_muscle 25 .81 RPM
bodymap2_thyroid 53 .67 RPM
bodymap2_prostate 47 .54 RPM
bodymap2_colon 42 .96 RPM
bodymap2_testis 58 .20 RPM
bodymap2_brain 45 .08 RPM
bodymap2_heart 27 .54 RPM
bodymap2_white_blood_cells 115 .92 RPM
bodymap2_lymph_node 67 .12 RPM
bodymap2_ovary 60 .09 RPM
bodymap2_kidney 58 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014366 possible_ortholog 1 retrogene
retro_amel_77,
Canis familiaris ENSCAFG00000014856 possible_ortholog 1 retrogene
retro_cfam_25,
Equus caballus ENSECAG00000024877 possible_ortholog 1 retrogene
retro_ecab_33,
Gorilla gorilla ENSGGOG00000015149 ortholog_one2one 2 retrogenes
retro_ggor_1144, retro_ggor_345,
Loxodonta africana ENSLAFG00000007382 possible_ortholog 1 retrogene
retro_lafr_44,
Microcebus murinus ENSMICG00000001767 ortholog_one2one 1 retrogene
retro_mmur_1265,
Mus musculus ENSMUSG00000029110 ortholog_one2one 1 retrogene
retro_mmus_522,
Nomascus leucogenys ENSNLEG00000000160 ortholog_one2one 2 retrogenes
retro_nleu_1713, retro_nleu_37,
Oryctolagus cuniculus ENSOCUG00000004998 ortholog_one2many 2 retrogenes
retro_ocun_1566, retro_ocun_162,
Otolemur garnettii ENSOGAG00000010776 ortholog_one2one 1 retrogene
retro_ogar_2121,
Pongo abelii ENSPPYG00000025865 possible_ortholog 2 retrogenes
retro_pabe_1240, retro_pabe_36,
Pteropus vampyrus ENSPVAG00000017017 ortholog_one2one 1 retrogene
retro_pvam_167,
Ictidomys tridecemlineatus ENSSTOG00000011101 ortholog_one2many 2 retrogenes
retro_itri_1108, retro_itri_171,
Tarsius syrichta ENSTSYG00000011244 ortholog_one2one 1 retrogene
retro_tsyr_1606,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_319 93.68 100.00
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Download FASTA sequences of all ENSG00000063978 retrocopies