Parental gene:

C5H4ORF43, ENSMMUG00000004482

Aliases:C5H4orf43, C4orf43, TMA16
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:5:155734066..155758836(+)


>ENSMMUG00000004482
ATGCCTAAAGCACCAAAGGGAAAAAGTGCAGGACGGGAAAAAAAAGTCATCCATCCATATAGTAGAAAAGCAGCTCAAAT
TACGAGAGAGGCCCACAAACAAGAAAAAAAGGAAAAATTGAAGAATGAAAAGGCCTTGCGTCTCAACCTTATTGGTGAAA
AACTGCAATGGTTTCAAAACCATCTTGATCCCCAAAAGAACAGATATTCAAAGAAAGATGCTTGTCAACTAATTGAAAGG
TACTTGAATCGATTCAGCAGTGAGCTGGAGCAGATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCGGCACTG
TTCCCGGGAGACCGTCATCAAGCAGACCATGGAGCGGGAGCGACAGCAGTATGAAGGATATGGCCTTGAGATTCCTGACA
TCCTAAATGCAAGTAATCTGAAAATGTTCAGGGAATGGGACTTTGATCTGAAGAAATTACCGAACATTAAAATGAGAAAA
ATTGGCGCTAATGATGCAATTCCCAAGAAGTGCAAGAGGAAAACTATTATAACTGTAGACCAAGATTTAGGGGAATTGGA
ACTAAACGATGAATCAAGTGATTCAGATGAGGAAATGACTGCAGTGGCCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .82 RPM
SRP007412_brain 0 .45 RPM
SRP007412_cerebellum 1 .16 RPM
SRP007412_heart 1 .06 RPM
SRP007412_kidney 0 .82 RPM
SRP007412_liver 1 .43 RPM
SRP007412_testis 2 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006702 ortholog_one2many 2 retrogenes
retro_chof_1717, retro_chof_2104,
Cavia porcellus ENSCPOG00000001119 ortholog_one2many 1 retrogene
retro_cpor_444,
Dasypus novemcinctus ENSDNOG00000006820 ortholog_one2many 1 retrogene
retro_dnov_489,
Echinops telfairi ENSETEG00000009734 ortholog_one2many 1 retrogene
retro_etel_1378,
Homo sapiens ENSG00000198498 ortholog_one2many 2 retrogenes
retro_hsap_378, retro_hsap_879,
Gorilla gorilla ENSGGOG00000025324 ortholog_many2many 1 retrogene
retro_ggor_713,
Macropus eugenii ENSMEUG00000001134 ortholog_one2many 3 retrogenes
retro_meug_1830, retro_meug_1895, retro_meug_396,
Monodelphis domestica ENSMODG00000002170 ortholog_one2many 1 retrogene
retro_mdom_881,
Mus musculus ENSMUSG00000025591 ortholog_one2many 2 retrogenes
retro_mmus_299, retro_mmus_329,
Nomascus leucogenys ENSNLEG00000006466 ortholog_one2many 2 retrogenes
retro_nleu_1631, retro_nleu_2590,
Otolemur garnettii ENSOGAG00000001860 ortholog_one2many 1 retrogene
retro_ogar_3308,
Pongo abelii ENSPPYG00000015167 ortholog_one2many 1 retrogene
retro_pabe_329,
Pan troglodytes ENSPTRG00000023618 ortholog_one2many 2 retrogenes
retro_ptro_294, retro_ptro_3035,
Rattus norvegicus ENSRNOG00000014188 ortholog_one2many 3 retrogenes
retro_rnor_2309, retro_rnor_845, retro_rnor_846,
Sorex araneus ENSSARG00000003780 ortholog_one2many 1 retrogene
retro_sara_168,
Ictidomys tridecemlineatus ENSSTOG00000024763 ortholog_one2many 3 retrogenes
retro_itri_1085, retro_itri_1372, retro_itri_715,
Tupaia belangeri ENSTBEG00000017224 ortholog_one2many 7 retrogenes
retro_tbel_168, retro_tbel_2196, retro_tbel_2345, retro_tbel_2474, retro_tbel_3235, retro_tbel_3987, retro_tbel_4393,
Tarsius syrichta ENSTSYG00000008284 ortholog_one2many 1 retrogene
retro_tsyr_686,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_184 99.01 100.00
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2. retro_mmul_276 96.06 100.00
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Download FASTA sequences of all ENSMMUG00000004482 retrocopies