RetrogeneDB ID:

retro_meug_396

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold109357:5438..6042(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:TMA16
Ensembl ID:ENSMEUG00000001134
Aliases:None
Description:translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638]


Retrocopy-Parental alignment summary:






>retro_meug_396
CCAAAATCACTGAAGGGGAAGAGTTCAGGACAACAGAAAAAAGTTTTACATCTTTATAGCAGAAAAGCAGCTCAACTTAA
TCAAGAAGCTCACAAATAAGAGAGGAAGGAAAAGTTGAAGAATGAGAAGACTTTGCGTTTAAACATTATAGGTAAGAAAC
TGCAATGGTTTCAAAGTCACCTTGATCCTCACAAAAGAGAGTATACAAAGAAAGATGCCTGTGAACTAATAAAGAGTTAT
TTACATCGGTTCGACAGTGAACTGGAACAGATTGAGTTACAGAATGGCATCAAAGGCAGACAGGGAAGGAGGCACTTCTC
TCAAGAAACAGTCATCAAACAGATGGTAGAACGTGAGCAGAAACGCTACGAAGGCTATGGCATGGAAATTCCTGATGCTG
TGAATGCAAAACATCCGAGAACTTTCAGGGAATGGGATAATGATCTGAAGAAACTGCCAAATATTAAGATGAGAAAATTT
TGTGCTAATGATGGAATTTCTAACAATGATAAAAAGAAAGATATTGTGTCTACAGAGGTAGATTTGGGGGAAATAGAGCC
AAGATGGATCAGATGACTCCGATAAGGAAATGCCGGAGGTGGCC

ORF - retro_meug_396 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.19 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalPKSLKGKSSGQQKKVVHPYSRKAAQLNREAHKQERKEKLKNEKALRLNIIGEKLQWFQSHLDPHKREYTK
PKSLKGKSSGQQKKV.H.YSRKAAQLN.EAHK.ERKEKLKNEK.LRLNIIG.KLQWFQSHLDPHKREYTK
RetrocopyPKSLKGKSSGQQKKVLHLYSRKAAQLNQEAHK*ERKEKLKNEKTLRLNIIGKKLQWFQSHLDPHKREYTK
ParentalKDACELIESYLHRFDSELEQIELQNSIKGRQGRRHFSRETVIKQTVERERKRYEGYGMEIPDIVNAKHLR
KDACELI.SYLHRFDSELEQIELQN.IKGRQGRRHFS.ETVIKQ.VERE.KRYEGYGMEIPD.VNAKH.R
RetrocopyKDACELIKSYLHRFDSELEQIELQNGIKGRQGRRHFSQETVIKQMVEREQKRYEGYGMEIPDAVNAKHPR
ParentalTFREWDGDLKKLPNIMMRKFCANDGISNKDKKKDIVSTEVDLGEIE-SQDGSDDSDEEMPEVA
TFREWD.DLKKLPNI.MRKFCANDGISN.DKKKDIVSTEVDLGEIE......D...E.MPEVA
RetrocopyTFREWDNDLKKLPNIKMRKFCANDGISNNDKKKDIVSTEVDLGEIE>QDGSDDSDKE-MPEVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide