Parental gene:

LPCAT2, ENSMMUG00000004478

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:20:53753668..53829239(+)


>ENSMMUG00000004478
ATGAGCCGGTGCGCCCAGGCGGCGGCAGTGGCGGCCACAGTGCCAGCTGCCGGCGTCGGGAACGTAGGGCTGCGGCCACC
CATGGTGCCCCGTCAGGCGTCCTTCTTCCCGCCGCCGGTGCCTAACCCCTTCGTGCAGCAGACGCAGATCGGCTCCGCGA
GGCGGGTCCAGATTTTTCTTCTTGGGATTATCCTGCTTCCAATTCGTGTCTTATTGGTTGCTTTAATTTTATTACTTGCA
TGGCCATTTGCTGCAATTTCAACAGTATGCTGTCCTGAAAAGCTGACCCACCCAGTAACTGGTTGGAGGAGGAAAATTAC
TCAAACAGCTTTGAAATTTCTGGGTCGTGCTATGTTCTTTTCAATGGGATTTATAGTTTCTGTAAAAGGAAGGATTGCAA
GTCCTTTGGAAGCACCGGTTTTTGTTGCTGCCCCTCATTCAACATTCTTTGATGGAATTGCCTGTGTTGTAGCTGGGTTA
CCTTCTATGGTATCTCGAAATGAGAATGCACAAGTCCCTCTGATTGGCAGAATGTTACGGGCTGTGCAACCAATTTTGGT
GTCCCGTGTAGATCCGGATTCCCGAAAAAACACAATAAATGAAATAATAAAGCGAACAACATCAGGAGGAGAATGGCCCC
AGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCGTTCCTGTTTGATTACTTTTAAACCAGGAGCCTTCATTCCAGGA
GTTCCAGTGCAGCCAGTCCTCCTCAGATACCCAAACAAGCTGGATACTGTGACCTGGACATGGCAAGGATATACATTCAT
TCAGCTTTGCATGCTTACTTTCTGCCAGCTCTTCACAAAGGTAGAAGTTGAGTTTATGCCAGTTCAAGTACCAAATGATG
AAGAAAAAAATGATCCTGTCCTTTTTGCTAATAAAGTCCGGAATGTAATGGCAGAAGCTCTGGGAATACCAGTAACAGAT
CATACCTACGAAGATTGCAGATTGATGATTTCAGCAGGACAGCTAACATTGCCTATGGAAGCTGGGCTGGTGGAATTTAC
TAAAATTAGCCGGAAATTGAAATTAGATTGGGATGGTGTTCGTAAGCAATTGGATGAATATGCATCTATCGCGAGTTCCT
CAAAAGGAGGAAGAATTGGAATTGACGAATTCGCCAAGTATTTAAAGTTGCCTGTTTCAGATGTCTTGAGACAACTTTTT
GCACTCTTTGACAGGAACCATGACGGCAGCATCGACTTCCGAGAGTATGTGATTGGCCTGGCTGTCTTGTGCAACCCTGC
CAATACAGAGGAGATCATCCAAGTGGCATTTAAGCTCTTTGATGTTGATGAGGATGGCTACATAACAGAGGAAGAGTTCT
CTACCATTCTACAGGCTTCCCTTGGAGTGCCTGACCTTGATGTTTCTGGTCTCTTCAAAGAAATAGCCCAAGGGGACTCA
ATTTCCTATGAGGAATTTAAAAGTTTTGCCTTAAGGCATCCAGAATATGCTAAGATATTTACCACATACCTAGACCTCCA
GACGTGCCATGTGTTTTCATTACCAAAAGAAGTCCAGACAACCCCCTCCATTGCCAGTAATAAAGTCAGCCCTGAAAAGC
ATGAAGAGAGTGCCTCAGACAAAAAAGATGACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .43 RPM
SRP007412_brain 3 .47 RPM
SRP007412_cerebellum 0 .97 RPM
SRP007412_heart 0 .65 RPM
SRP007412_kidney 5 .63 RPM
SRP007412_liver 2 .22 RPM
SRP007412_testis 5 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019272 ortholog_one2one 1 retrogene
retro_btau_64,
Callithrix jacchus ENSCJAG00000012902 ortholog_one2one 1 retrogene
retro_cjac_2945,
Dasypus novemcinctus ENSDNOG00000006859 ortholog_one2one 1 retrogene
retro_dnov_1735,
Dipodomys ordii ENSDORG00000013193 ortholog_one2one 1 retrogene
retro_dord_399,
Equus caballus ENSECAG00000009649 ortholog_one2one 1 retrogene
retro_ecab_865,
Erinaceus europaeus ENSEEUG00000014277 ortholog_one2one 1 retrogene
retro_eeur_109,
Homo sapiens ENSG00000087253 ortholog_one2one 1 retrogene
retro_hsap_185,
Gorilla gorilla ENSGGOG00000005144 ortholog_one2one 1 retrogene
retro_ggor_266,
Loxodonta africana ENSLAFG00000003965 ortholog_one2one 1 retrogene
retro_lafr_66,
Myotis lucifugus ENSMLUG00000004008 ortholog_one2one 1 retrogene
retro_mluc_88,
Mus musculus ENSMUSG00000033192 ortholog_one2one 1 retrogene
retro_mmus_270,
Nomascus leucogenys ENSNLEG00000001258 ortholog_one2one 1 retrogene
retro_nleu_994,
Pongo abelii ENSPPYG00000007358 ortholog_one2one 1 retrogene
retro_pabe_445,
Pan troglodytes ENSPTRG00000008124 ortholog_one2one 2 retrogenes
retro_ptro_171, retro_ptro_2928,
Pteropus vampyrus ENSPVAG00000007801 ortholog_one2one 1 retrogene
retro_pvam_173,
Rattus norvegicus ENSRNOG00000016643 ortholog_one2one 1 retrogene
retro_rnor_309,
Sorex araneus ENSSARG00000011914 ortholog_one2one 1 retrogene
retro_sara_88,
Sarcophilus harrisii ENSSHAG00000012383 ortholog_one2one 1 retrogene
retro_shar_116,
Tursiops truncatus ENSTTRG00000001182 ortholog_one2one 1 retrogene
retro_ttru_188,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_392 58.46 84.74
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Download FASTA sequences of all ENSMMUG00000004478 retrocopies