Parental gene:

PHF5A, ENSLACG00000012094

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127309.1:675889..682110(+)


>ENSLACG00000012094
ATGGCCAAGCATCACCCTGATCTCATCTTCTGCAGGAAGCAAGCCGGCGTGGCTATCGGAAGGCTGTGTGAAAAATGTGA
TGGTAAATGCGTGATCTGCGATTCCTACGTGAGGCCGTGCACGCTGGTGCGAATCTGCGACGAGTGTAATTACGGGTCCT
ACCAAGGCCGCTGCGTAATCTGCGGAGGGCCTGGTGTCTCGGATGCTTACTATTGTAAAGAATGCACGATTCAGGAAAAA
GATGTAAGTGTTCTGCACAGGAATGGTGGCTTTTGGGGCTAG

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 6 .56 RPM
DRP000627_kidney 4 .46 RPM
DRP000627_pelvic_fin 11 .80 RPM
DRP000627_pharynx 3 .48 RPM
DRP000627_gill 4 .52 RPM
DRP000627_tail_muscle 2 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015687 ortholog_one2one 1 retrogene
retro_amel_1674,
Canis familiaris ENSCAFG00000001090 ortholog_one2one 1 retrogene
retro_cfam_369,
Callithrix jacchus ENSCJAG00000004999 ortholog_one2many 3 retrogenes
retro_cjac_1194, retro_cjac_1527, retro_cjac_906,
Echinops telfairi ENSETEG00000010741 ortholog_one2one 1 retrogene
retro_etel_102,
Homo sapiens ENSG00000100410 ortholog_one2one 3 retrogenes
retro_hsap_2033, retro_hsap_2647, retro_hsap_2829,
Gorilla gorilla ENSGGOG00000001104 ortholog_one2one 2 retrogenes
retro_ggor_1848, retro_ggor_1965,
Microcebus murinus ENSMICG00000013520 ortholog_one2one 1 retrogene
retro_mmur_758,
Macaca mulatta ENSMMUG00000011354 ortholog_one2one 3 retrogenes
retro_mmul_1390, retro_mmul_1471, retro_mmul_1503,
Mustela putorius furo ENSMPUG00000016398 ortholog_one2one 2 retrogenes
retro_mputfur_359, retro_mputfur_439,
Mus musculus ENSMUSG00000061360 ortholog_one2one 3 retrogenes
retro_mmus_1070, retro_mmus_1071, retro_mmus_1155,
Nomascus leucogenys ENSNLEG00000015481 ortholog_one2one 2 retrogenes
retro_nleu_1205, retro_nleu_653,
Oryctolagus cuniculus ENSOCUG00000012705 ortholog_one2one 1 retrogene
retro_ocun_640,
Otolemur garnettii ENSOGAG00000002839 ortholog_one2many 1 retrogene
retro_ogar_55,
Pongo abelii ENSPPYG00000011870 ortholog_one2one 2 retrogenes
retro_pabe_1661, retro_pabe_2324,
Pan troglodytes ENSPTRG00000014427 ortholog_one2one 3 retrogenes
retro_ptro_1352, retro_ptro_1917, retro_ptro_2479,
Pteropus vampyrus ENSPVAG00000001162 ortholog_one2one 1 retrogene
retro_pvam_66,
Rattus norvegicus ENSRNOG00000024170 ortholog_one2one 3 retrogenes
retro_rnor_2660, retro_rnor_2704, retro_rnor_2712,
Tarsius syrichta ENSTSYG00000001082 ortholog_one2one 1 retrogene
retro_tsyr_259,
Tursiops truncatus ENSTTRG00000003369 ortholog_one2one 1 retrogene
retro_ttru_1483,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_25 92.59 87.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSLACG00000012094 retrocopies