Parental gene: | PHF5A, ENSG00000100410 |
| Aliases: | PHF5A, INI, Rds3, SAP14b, SF3B7, SF3b14b, bK223H9.2 |
| Description: | PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 22:41855720..41864729(-) |
>ENSG00000100410
ATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTT
ACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAG
GACAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAGACAGACCTCTTCTATGAACGCAAAAAATACGGCTT
CAAGAAGAGGTGA
ATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAGCAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTT
ACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAG
GACAGAGATGGCTGCCCAAAGATTGTCAATCTGGGGAGCTCTAAGACAGACCTCTTCTATGAACGCAAAAAATACGGCTT
CAAGAAGAGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 10 .03 RPM |
| bodymap2_lung | 14 .87 RPM |
| bodymap2_breast | 7 .72 RPM |
| bodymap2_adipose | 9 .92 RPM |
| bodymap2_adrenal | 15 .07 RPM |
| bodymap2_skeletal_muscle | 12 .60 RPM |
| bodymap2_thyroid | 13 .48 RPM |
| bodymap2_prostate | 18 .46 RPM |
| bodymap2_colon | 14 .93 RPM |
| bodymap2_testis | 15 .67 RPM |
| bodymap2_brain | 8 .46 RPM |
| bodymap2_heart | 6 .70 RPM |
| bodymap2_white_blood_cells | 26 .11 RPM |
| bodymap2_lymph_node | 16 .83 RPM |
| bodymap2_ovary | 11 .62 RPM |
| bodymap2_kidney | 13 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015687 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000001090 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004999 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000010741 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001104 | ortholog_one2one | 2 retrogenes | |
| Latimeria chalumnae | ENSLACG00000012094 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000013520 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011354 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016398 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000061360 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000012705 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002839 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000011870 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000014427 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000001162 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000024170 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000001082 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003369 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2033 | 84.82 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_2647 | 82.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2829 | 86.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000100410 retrocopies