Parental gene:

STIP1, ENSGGOG00000012132

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:60995681..61014158(+)


>ENSGGOG00000012132
ATGGAGTCCGGCAGCCCAATGGGAGAGGTGGAAATTTCCAGAACGATCAGAACCAATGGGCGCGGCCAGCGCGGCTACGA
TTGGCAGTGCAAAAGACCAATCCGTGTCGCAGAAGTTCGCTCCTCCCTCCATTCGTGGAGCCTGAGATGGGTCAATGAGC
TGAAGGAGAAAGGCAACAAGGCCCTGAGCGTGGGTAACATCGATGATGCCTTACAGTGCTACTCCGAAGCTATTAAGCTG
GATCCCCACAACCACGTGCTGTACAGCAACCGTTCTGCTGCCTATGCCAAGAAAGGAGACTACCAGAAGGCTTACGAGGA
TGGCTGCAAGACTGTCGACCTAAAGCCTGACTGGGGCAAGGGCTATTCACGAAAAGCAGCAGCCCTAGAGTTCTTAAACC
GCTTTGAAGAAGCCAAGCGAACCTATGAGGAGGGCTTAAAACACGAGGCAAATAACCCTCAACTGAAAGAGGGTTTACAG
AATATGGAGGCCAGGTTGGCAGAGAGAAAATTCATGAACCCTTTCAACATGCCTAATCTGTATCAGAAGTTGGAGAGTGA
TCCCAGGACAAGGACACTACTCAGTGATCCTACCTACCGGGAGCTGATAGAGCAGCTACGAAACAAGCCTTCTGACCTGG
GCACGAAACTACAAGATCCCCGGATCATGACCACTCTCAGCGTCCTCCTTGGGGTCGATCTGGGCAGTATGGATGAGGAG
GAAGAGATTGCAACACCTCCACCACCACCCCCTCCCAAAAAGGAGACCAAGCCAGAGCCAATGGAAGAAGATCTTCCAGA
GAATAAGAAGCAGGCACTGAAAGAAAAAGAGCTGGGGAACGATGCCTACAAGAAGAAAGACTTTGACACAGCCTTGAAGC
ATTACGACAAAGCCAAGGAGCTGGACCCCACCAACATGACTTACATTACCAATCAAGCAGCGGTATACTTTGAAAAGGGC
GACTACAATAAGTGCCGGGAGCTTTGTGAGAAGGCCATTGAAGTGGGGAGAGAAAACCGAGAAGACTATCGACAGATTGC
CAAAGCATATGCTCGAATTGGCAACTCCTACTTCAAAGAAGAAAAGTACAAGGATGCCATCCATTTCTATAACAAGTCTC
TGGCAGAGCATCGAACCCCAGATGTGCTCAAGAAATGCCAGCAGGCAGAGAAAATCCTGAAGGAGCAAGAGCGGCTGGCC
TACATAAACCCCGACCTGGCTTTGGAGGAGAAGAACAAAGGCAACGAGTGTTTTCAGAAAGGGGACTATCCCCAGGCCAT
GAAGCATTATACAGAAGCCATCAAAAGGAACCCGAAAGATGCCAAATTATACAGCAATCGAGCTGCCTGCTACACCAAAC
TCCTGGAGTTCCAGCTGGCACTCAAGGACTGTGAGGAATGTATCCGGCTGGAGCCGACCTTCATCAAGGGTTATACACGG
AAAGCCGCTGCGCTGGAAGCGATGAAGGACTACACCAAAGCCATGGATGTGTACCAGAAGGCGCTAGACCTGGACTCCAG
CTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGC
GACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAG
GACCCCCAGGCACTCAGCGAACACTTAAAGAATCCTGTAATAGCACAGAAGATCCAGAAGCTGATGGATGTGGGTCTGAT
TGCAATTCGGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 143 .43 RPM
SRP007412_cerebellum 110 .08 RPM
SRP007412_heart 38 .09 RPM
SRP007412_kidney 64 .73 RPM
SRP007412_liver 31 .86 RPM
SRP007412_testis 466 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000015663 ortholog_one2many 2 retrogenes
retro_btau_836, retro_btau_913,
Canis familiaris ENSCAFG00000014672 ortholog_one2one 6 retrogenes
retro_cfam_1077, retro_cfam_1172, retro_cfam_1722, retro_cfam_1982, retro_cfam_474, retro_cfam_497,
Callithrix jacchus ENSCJAG00000018209 ortholog_one2one 2 retrogenes
retro_cjac_1043, retro_cjac_2222,
Cavia porcellus ENSCPOG00000002914 ortholog_one2one 1 retrogene
retro_cpor_1443,
Felis catus ENSFCAG00000005937 ortholog_one2one 1 retrogene
retro_fcat_1510,
Homo sapiens ENSG00000168439 ortholog_one2one 1 retrogene
retro_hsap_4867,
Microcebus murinus ENSMICG00000016933 ortholog_one2one 1 retrogene
retro_mmur_1045,
Macaca mulatta ENSMMUG00000012953 ortholog_one2one 1 retrogene
retro_mmul_2607,
Nomascus leucogenys ENSNLEG00000004777 ortholog_one2one 1 retrogene
retro_nleu_2000,
Pan troglodytes ENSPTRG00000003820 ortholog_one2one 1 retrogene
retro_ptro_3242,
Rattus norvegicus ENSRNOG00000021164 ortholog_one2one 2 retrogenes
retro_rnor_2862, retro_rnor_468,
Ictidomys tridecemlineatus ENSSTOG00000014262 ortholog_one2one 1 retrogene
retro_itri_1578,
Tursiops truncatus ENSTTRG00000010235 ortholog_one2one 1 retrogene
retro_ttru_1900,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_3040 86.07 54.24
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Download FASTA sequences of all ENSGGOG00000012132 retrocopies