Parental gene: | STIP1, ENSBTAG00000015663 |
| Aliases: | None |
| Description: | Stress-induced-phosphoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBZ8] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 29:43111545..43124096(+) |
>ENSBTAG00000015663
ATGGAGCAGGTAAATGAGCTCAAAGAGAAGGGCAACAAGGCCCTGAGTGCCGGCAACATTGACGATGCGCTGCAGTGCTA
CTCCGAAGCCATTAAGTTAGACCCCCAGAACCACGTGCTCTACAGCAATCGCTCTGCGGCCTATGCCAAGAAGGGAGACT
ACCAGAAGGCTTACGAGGACGGCTGCAAGACCGTTGACCTGAAGCCTGACTGGGGCAAGGGCTACTCACGAAAAGCAGCG
GCTCTTGAATTCTTAAACCGATTTGAAGAAGCCAAGCAAACCTATGAGGAGGGTTTAAAACATGAAGCAAACAATCCTCA
GCTCAAAGAAGGTTTACAGAATATGGAGGCCCGGCTGGCAGAAAGGAAATTCATGAACCCTTTCAACATGCCTAATCTGT
ACCAGAAGTTGGAGAGTGATCCCAGGACCAAGACTCTGCTCGCAGATCCTACCTACCGGGAACTGATCGAGCAGCTGCGG
AACAAGCCGTCCGACCTGGGCACGAAACTGCAAGATCCCCGGATCATGACTACTCTTAGCGTCCTGCTCGGAGTTGATCT
GGGCAGTATGGATGAAGAGGAGGAAGTTGCAACACCTCCACCACCACCTCCTCCCAAAAAGGAGACAAAACCAGAGCCAA
TGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCGCTGAGAGAAAAAGAGCTGGGGAATGAAGCCTACAAGAAGAAGGAC
TTTGACACGGCCTTGAAGCACTACGACAAAGCCAAAGACCTGGATCCCACCAACATGACGTACATAACCAACCAAGCAGC
CGTGTACTTCGAAAAGGGTGACTATGGTCAATGCCGGGAGCTTTGTGAGAAGGCCATTGAAGTGGGGCGAGAAAACCGAG
AAGACTACCGACAGATTGCCAAAGCTTATGCACGAATTGGCAACTCTTACTTCAAAGAAGAAAAGTACAAGGATGCCATC
CATTTCTACAACAAGTCTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAATGCCAGCAGGCAGAGAAAATCTTGAA
GGAGCAAGAGCGGCTGGCCTACATAAACCCTGACCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAGTGTTTTCAGAAAG
GGGACTACCCCCAGGCCATGAAGCACTACACGGAAGCCATCAAACGGAACCCCAAAGACGCCAAGCTGTACAGCAACCGA
GCTGCCTGCTACACCAAGCTCCTGGAGTTCCAGCTGGCGCTCAAGGACTGTGAGGAGTGCATCCAGCTGGAGCCAACCTT
CATCAAGGGTTATACCCGGAAAGCAGCTGCCCTGGAGGCGATGAAGGACTACACGAAAGCCATGGATGTCTACCAGAAAG
CACTCGACCTGGACTCTAACTGCAAGGAGGCCGCAGATGGTTACCAGCGCTGCGTGATGGCCCAGTATAACCGACACGAC
AGCCCCGAGGATGTGAAGCGGCGGGCCATGGCCGACCCGGAGGTGCAGCAAATAATGAGCGACCCGGCCATGCGGCTCAT
CCTGGAACAGATGCAGAAGGACCCCCAGGCGCTCAGCGAACACTTAAAGAACCCTGTGATAGCACAGAAGATCCAGAAGC
TGATGGATGTGGGTCTGATAGCCATCCGGTGA
ATGGAGCAGGTAAATGAGCTCAAAGAGAAGGGCAACAAGGCCCTGAGTGCCGGCAACATTGACGATGCGCTGCAGTGCTA
CTCCGAAGCCATTAAGTTAGACCCCCAGAACCACGTGCTCTACAGCAATCGCTCTGCGGCCTATGCCAAGAAGGGAGACT
ACCAGAAGGCTTACGAGGACGGCTGCAAGACCGTTGACCTGAAGCCTGACTGGGGCAAGGGCTACTCACGAAAAGCAGCG
GCTCTTGAATTCTTAAACCGATTTGAAGAAGCCAAGCAAACCTATGAGGAGGGTTTAAAACATGAAGCAAACAATCCTCA
GCTCAAAGAAGGTTTACAGAATATGGAGGCCCGGCTGGCAGAAAGGAAATTCATGAACCCTTTCAACATGCCTAATCTGT
ACCAGAAGTTGGAGAGTGATCCCAGGACCAAGACTCTGCTCGCAGATCCTACCTACCGGGAACTGATCGAGCAGCTGCGG
AACAAGCCGTCCGACCTGGGCACGAAACTGCAAGATCCCCGGATCATGACTACTCTTAGCGTCCTGCTCGGAGTTGATCT
GGGCAGTATGGATGAAGAGGAGGAAGTTGCAACACCTCCACCACCACCTCCTCCCAAAAAGGAGACAAAACCAGAGCCAA
TGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCGCTGAGAGAAAAAGAGCTGGGGAATGAAGCCTACAAGAAGAAGGAC
TTTGACACGGCCTTGAAGCACTACGACAAAGCCAAAGACCTGGATCCCACCAACATGACGTACATAACCAACCAAGCAGC
CGTGTACTTCGAAAAGGGTGACTATGGTCAATGCCGGGAGCTTTGTGAGAAGGCCATTGAAGTGGGGCGAGAAAACCGAG
AAGACTACCGACAGATTGCCAAAGCTTATGCACGAATTGGCAACTCTTACTTCAAAGAAGAAAAGTACAAGGATGCCATC
CATTTCTACAACAAGTCTCTGGCAGAGCACCGAACCCCAGATGTGCTCAAGAAATGCCAGCAGGCAGAGAAAATCTTGAA
GGAGCAAGAGCGGCTGGCCTACATAAACCCTGACCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAGTGTTTTCAGAAAG
GGGACTACCCCCAGGCCATGAAGCACTACACGGAAGCCATCAAACGGAACCCCAAAGACGCCAAGCTGTACAGCAACCGA
GCTGCCTGCTACACCAAGCTCCTGGAGTTCCAGCTGGCGCTCAAGGACTGTGAGGAGTGCATCCAGCTGGAGCCAACCTT
CATCAAGGGTTATACCCGGAAAGCAGCTGCCCTGGAGGCGATGAAGGACTACACGAAAGCCATGGATGTCTACCAGAAAG
CACTCGACCTGGACTCTAACTGCAAGGAGGCCGCAGATGGTTACCAGCGCTGCGTGATGGCCCAGTATAACCGACACGAC
AGCCCCGAGGATGTGAAGCGGCGGGCCATGGCCGACCCGGAGGTGCAGCAAATAATGAGCGACCCGGCCATGCGGCTCAT
CCTGGAACAGATGCAGAAGGACCCCCAGGCGCTCAGCGAACACTTAAAGAACCCTGTGATAGCACAGAAGATCCAGAAGC
TGATGGATGTGGGTCTGATAGCCATCCGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 94 .05 RPM |
| SRP017611_kidney | 73 .02 RPM |
| SRP017611_liver | 39 .87 RPM |
| ERP005899_muscle | 101 .88 RPM |
| ERP005899_liver | 23 .50 RPM |
| SRP030211_testis | 133 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000014672 | ortholog_one2many | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018209 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000002914 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000005937 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000168439 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012132 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000016933 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012953 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004777 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003820 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021164 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000014262 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010235 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_836 | 98.34 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_913 | 91.71 | 77.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000015663 retrocopies