Parental gene:

RPL34, ENSGGOG00000007650

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:4:118014621..118026790(+)


>ENSGGOG00000007650
CTCTTCCGGGGACGTTGTCTGCAGGCACTCAGAATGGTCCAGCGTTTGACATACCGACGTAGGCTTTCCTACAATACAGC
CTCTAACAAAACTAGGCTGTCCCGAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAA
AATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAA
ACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCT
TATCGAGGAGCAGAAAATCGTTGTGAAAGTCTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 67 .14 RPM
SRP007412_cerebellum 96 .60 RPM
SRP007412_heart 42 .96 RPM
SRP007412_kidney 227 .51 RPM
SRP007412_liver 244 .87 RPM
SRP007412_testis 93 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001758 ortholog_one2one 20 retrogenes
retro_amel_1151, retro_amel_1298, retro_amel_1402, retro_amel_147, retro_amel_1595, retro_amel_1670, retro_amel_1678, retro_amel_1755, retro_amel_240, retro_amel_368, retro_amel_388, retro_amel_410, retro_amel_477, retro_amel_655, retro_amel_690, retro_amel_739, retro_amel_874, retro_amel_936, retro_amel_949, retro_amel_978,
Dasypus novemcinctus ENSDNOG00000011179 ortholog_one2one 26 retrogenes
retro_dnov_1172, retro_dnov_1775, retro_dnov_2020, retro_dnov_2025, retro_dnov_2079, retro_dnov_2127, retro_dnov_2137, retro_dnov_2275, retro_dnov_2385, retro_dnov_2501, retro_dnov_252, retro_dnov_262, retro_dnov_2627, retro_dnov_2651, retro_dnov_325, retro_dnov_339, retro_dnov_430, retro_dnov_553, retro_dnov_565, retro_dnov_59, retro_dnov_606, retro_dnov_635, retro_dnov_658, retro_dnov_862, retro_dnov_88, retro_dnov_978,
Gadus morhua ENSGMOG00000009982 ortholog_one2one 1 retrogene
retro_gmor_31,
Loxodonta africana ENSLAFG00000032615 ortholog_one2one 6 retrogenes
retro_lafr_1039, retro_lafr_1232, retro_lafr_182, retro_lafr_298, retro_lafr_306, retro_lafr_733,
Macropus eugenii ENSMEUG00000009361 ortholog_one2one 3 retrogenes
retro_meug_1012, retro_meug_1754, retro_meug_1775,
Macaca mulatta ENSMMUG00000011901 possible_ortholog 1 retrogene
retro_mmul_162,
Monodelphis domestica ENSMODG00000020601 ortholog_one2one 3 retrogenes
retro_mdom_1690, retro_mdom_774, retro_mdom_836,
Pongo abelii ENSPPYG00000014988 possible_ortholog 18 retrogenes
retro_pabe_1171, retro_pabe_1351, retro_pabe_1609, retro_pabe_1630, retro_pabe_1859, retro_pabe_2338, retro_pabe_2560, retro_pabe_2784, retro_pabe_2931, retro_pabe_3330, retro_pabe_3352, retro_pabe_3375, retro_pabe_3788, retro_pabe_385, retro_pabe_420, retro_pabe_566, retro_pabe_77, retro_pabe_827,
Pelodiscus sinensis ENSPSIG00000003295 ortholog_one2one 1 retrogene
retro_psin_60,
Sarcophilus harrisii ENSSHAG00000001357 ortholog_one2many 1 retrogene
retro_shar_799,
Sarcophilus harrisii ENSSHAG00000002052 ortholog_one2many 3 retrogenes
retro_shar_131, retro_shar_324, retro_shar_419,
Tupaia belangeri ENSTBEG00000003574 ortholog_one2one 24 retrogenes
retro_tbel_1109, retro_tbel_1298, retro_tbel_1337, retro_tbel_1532, retro_tbel_1781, retro_tbel_1857, retro_tbel_1941, retro_tbel_213, retro_tbel_2162, retro_tbel_2165, retro_tbel_2372, retro_tbel_2391, retro_tbel_2601, retro_tbel_279, retro_tbel_335, retro_tbel_3606, retro_tbel_3984, retro_tbel_4059, retro_tbel_4398, retro_tbel_657, retro_tbel_74, retro_tbel_901, retro_tbel_974, retro_tbel_983,
Xenopus tropicalis ENSXETG00000021095 ortholog_one2many 1 retrogene
retro_xtro_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_226 77.52 100.00
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2. retro_ggor_308 86.72 100.00
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3. retro_ggor_327 86.07 95.31
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4. retro_ggor_462 86.07 95.31
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5. retro_ggor_479 72.00 76.56
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6. retro_ggor_561 61.90 64.06
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7. retro_ggor_607 66.67 93.75
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8. retro_ggor_638 75.32 60.16
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9. retro_ggor_680 71.88 97.66
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10. retro_ggor_696 88.35 79.69
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11. retro_ggor_747 66.27 64.84
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12. retro_ggor_760 52.50 60.94
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13. retro_ggor_781 77.05 95.31
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14. retro_ggor_975 86.51 98.44
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15. retro_ggor_995 83.20 97.66
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16. retro_ggor_1097 67.19 98.44
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17. retro_ggor_1236 55.37 93.75
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18. retro_ggor_1401 67.69 100.00
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19. retro_ggor_1471 88.98 99.22
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20. retro_ggor_1604 66.67 77.34
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21. retro_ggor_1657 64.81 84.38
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22. retro_ggor_1878 68.18 84.38
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23. retro_ggor_2123 62.24 76.56
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24. retro_ggor_2249 75.23 83.59
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25. retro_ggor_2262 94.40 97.66
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26. retro_ggor_2336 83.62 90.62
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27. retro_ggor_2397 87.40 99.22
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28. retro_ggor_2494 81.31 81.25
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29. retro_ggor_2723 66.15 100.00
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30. retro_ggor_2744 88.19 99.22
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31. retro_ggor_2884 68.06 55.47
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32. retro_ggor_3042 61.90 64.84
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Download FASTA sequences of all ENSGGOG00000007650 retrocopies