Parental gene: | VDAC1, ENSG00000213585 |
| Aliases: | VDAC1, PORIN, VDAC-1 |
| Description: | voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 5:133307605..133340824(-) |
>ENSG00000213585
ATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATGGATTTGGCTTAAT
AAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTGGAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAG
TGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACAGAGAAATGGAATACCGACAATACA
CTAGGCACCGAGATTACTGTGGAAGATCAGCTTGCACGTGGACTGAAGCTGACCTTCGATTCATCCTTCTCACCTAACAC
TGGGAAAAAAAATGCTAAAATCAAGACAGGGTACAAGCGGGAGCACATTAACCTGGGCTGCGACATGGATTTCGACATTG
CTGGGCCTTCCATCCGGGGTGCTCTGGTGCTAGGTTACGAGGGCTGGCTGGCCGGCTACCAGATGAATTTTGAGACTGCA
AAATCCCGAGTGACCCAGAGCAACTTTGCAGTTGGCTACAAGACTGATGAATTCCAGCTTCACACTAATGTGAATGACGG
GACAGAGTTTGGCGGCTCCATTTACCAGAAAGTGAACAAGAAGTTGGAGACCGCTGTCAATCTTGCCTGGACAGCAGGAA
ACAGTAACACGCGCTTCGGAATAGCAGCCAAGTATCAGATTGACCCTGACGCCTGCTTCTCGGCTAAAGTGAACAACTCC
AGCCTGATAGGTTTAGGATACACTCAGACTCTAAAGCCAGGTATTAAACTGACACTGTCAGCTCTTCTGGATGGCAAGAA
CGTCAATGCTGGTGGCCACAAGCTTGGTCTAGGACTGGAATTTCAAGCATAA
ATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATGGATTTGGCTTAAT
AAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTGGAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAG
TGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACAGAGAAATGGAATACCGACAATACA
CTAGGCACCGAGATTACTGTGGAAGATCAGCTTGCACGTGGACTGAAGCTGACCTTCGATTCATCCTTCTCACCTAACAC
TGGGAAAAAAAATGCTAAAATCAAGACAGGGTACAAGCGGGAGCACATTAACCTGGGCTGCGACATGGATTTCGACATTG
CTGGGCCTTCCATCCGGGGTGCTCTGGTGCTAGGTTACGAGGGCTGGCTGGCCGGCTACCAGATGAATTTTGAGACTGCA
AAATCCCGAGTGACCCAGAGCAACTTTGCAGTTGGCTACAAGACTGATGAATTCCAGCTTCACACTAATGTGAATGACGG
GACAGAGTTTGGCGGCTCCATTTACCAGAAAGTGAACAAGAAGTTGGAGACCGCTGTCAATCTTGCCTGGACAGCAGGAA
ACAGTAACACGCGCTTCGGAATAGCAGCCAAGTATCAGATTGACCCTGACGCCTGCTTCTCGGCTAAAGTGAACAACTCC
AGCCTGATAGGTTTAGGATACACTCAGACTCTAAAGCCAGGTATTAAACTGACACTGTCAGCTCTTCTGGATGGCAAGAA
CGTCAATGCTGGTGGCCACAAGCTTGGTCTAGGACTGGAATTTCAAGCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 168 .10 RPM |
| bodymap2_lung | 101 .88 RPM |
| bodymap2_breast | 187 .24 RPM |
| bodymap2_adipose | 139 .03 RPM |
| bodymap2_adrenal | 107 .87 RPM |
| bodymap2_skeletal_muscle | 566 .19 RPM |
| bodymap2_thyroid | 217 .29 RPM |
| bodymap2_prostate | 109 .60 RPM |
| bodymap2_colon | 146 .99 RPM |
| bodymap2_testis | 106 .24 RPM |
| bodymap2_brain | 238 .15 RPM |
| bodymap2_heart | 396 .10 RPM |
| bodymap2_white_blood_cells | 86 .27 RPM |
| bodymap2_lymph_node | 109 .48 RPM |
| bodymap2_ovary | 134 .92 RPM |
| bodymap2_kidney | 255 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000000985 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000005631 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013556 | ortholog_one2many | 8 retrogenes | |
| Cavia porcellus | ENSCPOG00000023840 | possible_ortholog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000002680 | ortholog_one2one | 5 retrogenes | |
| Dipodomys ordii | ENSDORG00000000714 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000012365 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000008421 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000078668 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000165637 | within_species_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010880 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000028818 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016235 | ortholog_one2one | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000014157 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010220 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000020402 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008023 | ortholog_one2one | 11 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030742 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000006605 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015781 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000017235 | ortholog_one2one | 12 retrogenes | |
| Rattus norvegicus | ENSRNOG00000006375 | ortholog_one2many | 8 retrogenes | |
| Sus scrofa | ENSSSCG00000014296 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000007764 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000016856 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000010448 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_308 | 71.05 | 66.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_458 | 65.29 | 91.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_847 | 77.37 | 66.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1119 | 90.76 | 65.02 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_1250 | 71.81 | 51.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_2250 | 71.61 | 81.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_2805 | 82.66 | 60.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_hsap_3527 | 85.31 | 50.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_hsap_4287 | 87.02 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_hsap_4721 | 93.66 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_hsap_4831 | 95.77 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_hsap_4872 | 90.91 | 62.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_hsap_4930 | 88.70 | 62.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000213585 retrocopies