RetrogeneDB ID:

retro_chof_813

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_151087:382..1012(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VDAC1
Ensembl ID:ENSCHOG00000005631
Aliases:None
Description:voltage-dependent anion channel 1 [Source:HGNC Symbol;Acc:12669]


Retrocopy-Parental alignment summary:






>retro_chof_813
TTTGGATGAATAAAACTCAATTTGAAAGCAAAGTCTGAGAATGGATTGGAGTTTACAAGCTCAGTCTCAGCCAACACTGA
GACCACCAGAGTGACGGGCAGTCTGGAAACCAAGTACAGATGGATTGAATATGGTATGACATTTACAGAGAAATGGAACA
CTAACAACACACTAGGCACCAAGATTACCGTGGAAGATCAGCTCGCACGTGGACTGAAGCTGACCTTTGATTCATCCTTC
TCACCTAACACTGGGAAAAAAAATGCTAAAATCAAGACAGGTTACAAGCGGGAGCACATTAACCTGGGCTGCGACGTGGA
TTTTGACATTGCCGGGCCTTCAATCCGAGGTGCTCTGGTACTGGGTTATGAGGGCTGGCTGGCTGGCTACCAGATGAATT
TTGAGACTGCAAAGTCACGAGTGACACAGAGTAATTTTGCAGTTGGCTACAAGACTGATGAATTCCAGCTTCACACTAAT
GTGAATGATGGGACGGAGTTTGGTGGCTCCATTTACCAGAAGGTGAACAAGAAGTTGGAGACTGCAGTCAGTCTCTCCTG
GACAGCCGAAAACAGTAACACTCGTTTTGGAATAGCAGCCAAGTACCAGATCGACCCTGATGCGTGCTTC

ORF - retro_chof_813 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.86 %
Parental protein coverage: 80.77 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLAR
FG.IKL.LK.KSENGLEFTSS.SANTETT.VTGSLETKYRW.EYG.TFTEKWNT.NTLGT.ITVEDQLAR
RetrocopyFG*IKLNLKAKSENGLEFTSSVSANTETTRVTGSLETKYRWIEYGMTFTEKWNTNNTLGTKITVEDQLAR
ParentalGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSR
GLKLTFDSSFSPNTG...AKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSR
RetrocopyGLKLTFDSSFSPNTGXXXAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSR
ParentalVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACF
VTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAV.L.WTA.NSNTRFGIAAKYQIDPDACF
RetrocopyVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVSLSWTAENSNTRFGIAAKYQIDPDACF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide