Parental gene:

SPCS2, ENSG00000118363

Aliases:None
Description:signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28962]
Organism:Human (Homo sapiens)
Coordinates:11:74660291..74690076(+)


>ENSG00000118363
ATGGCGGCGGCAGCTGTACAGGGCGGGAGAAGCGGTGGTAGCGGAGGCTGTAGTGGGGCTGGTGGTGCTTCCAACTGCGG
GACAGGAAGTGGCCGTAGCGGCTTGTTGGATAAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGAT
CAGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTA
ATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTT
TCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCAT
ATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCC
TCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGC
CGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCA
GGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAG

Library Parental gene expression (RPM)
bodymap2_liver 43 .16 RPM
bodymap2_lung 38 .29 RPM
bodymap2_breast 26 .15 RPM
bodymap2_adipose 25 .26 RPM
bodymap2_adrenal 37 .62 RPM
bodymap2_skeletal_muscle 17 .41 RPM
bodymap2_thyroid 41 .13 RPM
bodymap2_prostate 45 .27 RPM
bodymap2_colon 45 .21 RPM
bodymap2_testis 40 .89 RPM
bodymap2_brain 31 .10 RPM
bodymap2_heart 17 .43 RPM
bodymap2_white_blood_cells 44 .16 RPM
bodymap2_lymph_node 62 .44 RPM
bodymap2_ovary 37 .28 RPM
bodymap2_kidney 60 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017127 ortholog_one2one 1 retrogene
retro_amel_1372,
Choloepus hoffmanni ENSCHOG00000002974 ortholog_one2one 3 retrogenes
retro_chof_1392, retro_chof_1588, retro_chof_2300,
Callithrix jacchus ENSCJAG00000015576 ortholog_one2one 2 retrogenes
retro_cjac_1500, retro_cjac_1929,
Cavia porcellus ENSCPOG00000007273 ortholog_one2one 2 retrogenes
retro_cpor_438, retro_cpor_578,
Dipodomys ordii ENSDORG00000009679 ortholog_one2one 1 retrogene
retro_dord_423,
Gorilla gorilla ENSGGOG00000014500 ortholog_one2one 3 retrogenes
retro_ggor_1141, retro_ggor_372, retro_ggor_610,
Microcebus murinus ENSMICG00000011153 ortholog_one2one 2 retrogenes
retro_mmur_1566, retro_mmur_656,
Macaca mulatta ENSMMUG00000010685 ortholog_one2many 1 retrogene
retro_mmul_26,
Monodelphis domestica ENSMODG00000007130 ortholog_one2one 2 retrogenes
retro_mdom_1127, retro_mdom_1454,
Mus musculus ENSMUSG00000035227 ortholog_one2one 1 retrogene
retro_mmus_2088,
Nomascus leucogenys ENSNLEG00000016949 ortholog_one2one 2 retrogenes
retro_nleu_1710, retro_nleu_470,
Otolemur garnettii ENSOGAG00000015621 ortholog_one2one 1 retrogene
retro_ogar_2649,
Ochotona princeps ENSOPRG00000014459 ortholog_one2many 2 retrogenes
retro_opri_266, retro_opri_948,
Pongo abelii ENSPPYG00000003682 ortholog_one2one 4 retrogenes
retro_pabe_1237, retro_pabe_2619, retro_pabe_2817, retro_pabe_625,
Pan troglodytes ENSPTRG00000004073 ortholog_one2one 1 retrogene
retro_ptro_1007,
Rattus norvegicus ENSRNOG00000018164 ortholog_one2one 2 retrogenes
retro_rnor_2078, retro_rnor_2168,
Sarcophilus harrisii ENSSHAG00000005389 ortholog_one2one 1 retrogene
retro_shar_787,
Sus scrofa ENSSSCG00000014850 ortholog_one2one 1 retrogene
retro_sscr_648,
Ictidomys tridecemlineatus ENSSTOG00000012647 ortholog_one2one 2 retrogenes
retro_itri_1283, retro_itri_1584,
Tursiops truncatus ENSTTRG00000005830 ortholog_one2one 3 retrogenes
retro_ttru_1478, retro_ttru_1496, retro_ttru_1867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_360 99.12 100.00
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2. retro_hsap_723 66.41 56.19
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3. retro_hsap_1488 90.99 98.23
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4. retro_hsap_3137 74.17 51.33
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Download FASTA sequences of all ENSG00000118363 retrocopies