Parental gene:

SPCS2, ENSCJAG00000015576

Aliases:None
Description:signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28962]
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:63723854..63756925(-)


>ENSCJAG00000015576
ATGGCGGCGGCAGCTGCTCAGGGCGGGAGAAGCGGTGGTAGCGGAGGCAGTAGTGGGGCTGGCGGTGGTTCCAGCTGCGG
GACAGGCATTGGCCGTAGTGGCTTGTTGGATAAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGAT
CAGCTGTGAAAAACTCTTTGGATGACTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTCGAGAATTTTGGTCTA
ATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTT
TCCAGAGTCCAAACCCGTTTTGGCTTTGTGCGTCATATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCAT
ATAAAGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCC
TCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGC
TGAGTTCACCAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCA
GGCTCCATGACAGTCTTGCCACAGAAAGGAAAATAAAATAG

Library Parental gene expression (RPM)
SRP051959_spleen 17 .96 RPM
SRP051959_skeletal_muscle 16 .09 RPM
SRP051959_lymph_node 13 .95 RPM
SRP051959_lung 11 .75 RPM
SRP051959_liver 23 .39 RPM
SRP051959_kidney 13 .25 RPM
SRP051959_heart 13 .59 RPM
SRP051959_colon 14 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017127 ortholog_one2one 1 retrogene
retro_amel_1372,
Choloepus hoffmanni ENSCHOG00000002974 ortholog_one2one 3 retrogenes
retro_chof_1392, retro_chof_1588, retro_chof_2300,
Cavia porcellus ENSCPOG00000007273 ortholog_one2one 2 retrogenes
retro_cpor_438, retro_cpor_578,
Dipodomys ordii ENSDORG00000009679 ortholog_one2one 1 retrogene
retro_dord_423,
Homo sapiens ENSG00000118363 ortholog_one2one 4 retrogenes
retro_hsap_1488, retro_hsap_3137, retro_hsap_360, retro_hsap_723,
Gorilla gorilla ENSGGOG00000014500 ortholog_one2many 3 retrogenes
retro_ggor_1141, retro_ggor_372, retro_ggor_610,
Microcebus murinus ENSMICG00000011153 ortholog_one2one 2 retrogenes
retro_mmur_1566, retro_mmur_656,
Macaca mulatta ENSMMUG00000010685 ortholog_one2many 1 retrogene
retro_mmul_26,
Monodelphis domestica ENSMODG00000007130 ortholog_one2one 2 retrogenes
retro_mdom_1127, retro_mdom_1454,
Mus musculus ENSMUSG00000035227 ortholog_one2one 1 retrogene
retro_mmus_2088,
Nomascus leucogenys ENSNLEG00000016949 ortholog_one2one 2 retrogenes
retro_nleu_1710, retro_nleu_470,
Otolemur garnettii ENSOGAG00000015621 ortholog_one2one 1 retrogene
retro_ogar_2649,
Ochotona princeps ENSOPRG00000014459 ortholog_one2many 2 retrogenes
retro_opri_266, retro_opri_948,
Pongo abelii ENSPPYG00000003682 ortholog_one2one 4 retrogenes
retro_pabe_1237, retro_pabe_2619, retro_pabe_2817, retro_pabe_625,
Pan troglodytes ENSPTRG00000004073 ortholog_one2one 1 retrogene
retro_ptro_1007,
Rattus norvegicus ENSRNOG00000018164 ortholog_one2one 2 retrogenes
retro_rnor_2078, retro_rnor_2168,
Sarcophilus harrisii ENSSHAG00000005389 ortholog_one2one 1 retrogene
retro_shar_787,
Sus scrofa ENSSSCG00000014850 ortholog_one2one 1 retrogene
retro_sscr_648,
Ictidomys tridecemlineatus ENSSTOG00000012647 ortholog_one2one 2 retrogenes
retro_itri_1283, retro_itri_1584,
Tursiops truncatus ENSTTRG00000005830 ortholog_one2one 3 retrogenes
retro_ttru_1478, retro_ttru_1496, retro_ttru_1867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1500 97.50 53.10
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2. retro_cjac_1929 93.58 96.02
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Download FASTA sequences of all ENSCJAG00000015576 retrocopies