Parental gene:

RAP1A, ENSG00000116473

Aliases:RAP1A, KREV-1, KREV1, RAP1, SMGP21
Description:RAP1A, member of RAS oncogene family [Source:HGNC Symbol;Acc:9855]
Organism:Human (Homo sapiens)
Coordinates:1:112084839..112259313(+)


>ENSG00000116473
ATGCGTGAGTACAAGCTAGTGGTCCTTGGTTCAGGAGGCGTTGGGAAGTCTGCTCTGACAGTTCAGTTTGTTCAGGGAAT
TTTTGTTGAAAAATATGACCCAACGATAGAAGATTCCTACAGAAAGCAAGTTGAAGTCGATTGCCAACAGTGTATGCTCG
AAATCCTGGATACTGCAGGGACAGAGCAATTTACAGCAATGAGGGATTTGTATATGAAGAACGGCCAAGGTTTTGCACTA
GTATATTCTATTACAGCTCAGTCCACGTTTAACGACTTACAGGACCTGAGGGAACAGATTTTACGGGTTAAGGACACGGA
AGATGTTCCAATGATTTTGGTTGGCAATAAATGTGACCTGGAAGATGAGCGAGTAGTTGGCAAAGAGCAGGGCCAGAATT
TAGCAAGACAGTGGTGTAACTGTGCCTTTTTAGAATCTTCTGCAAAGTCAAAGATCAATGTTAATGAGATATTTTATGAC
CTGGTCAGACAGATAAATAGGAAAACACCAGTGGAAAAGAAGAAGCCTAAAAAGAAATCATGTCTGCTGCTCTAG

Library Parental gene expression (RPM)
bodymap2_liver 53 .23 RPM
bodymap2_lung 186 .53 RPM
bodymap2_breast 108 .70 RPM
bodymap2_adipose 165 .90 RPM
bodymap2_adrenal 161 .01 RPM
bodymap2_skeletal_muscle 135 .12 RPM
bodymap2_thyroid 160 .01 RPM
bodymap2_prostate 383 .76 RPM
bodymap2_colon 460 .12 RPM
bodymap2_testis 134 .40 RPM
bodymap2_brain 123 .15 RPM
bodymap2_heart 137 .41 RPM
bodymap2_white_blood_cells 292 .70 RPM
bodymap2_lymph_node 167 .13 RPM
bodymap2_ovary 114 .74 RPM
bodymap2_kidney 129 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005384 ortholog_one2one 1 retrogene
retro_amel_1764,
Canis familiaris ENSCAFG00000013686 ortholog_one2one 1 retrogene
retro_cfam_696,
Callithrix jacchus ENSCJAG00000013392 ortholog_one2one 7 retrogenes
retro_cjac_1671, retro_cjac_2218, retro_cjac_3376, retro_cjac_3707, retro_cjac_3843, retro_cjac_3844, retro_cjac_728,
Dasypus novemcinctus ENSDNOG00000007809 ortholog_one2one 5 retrogenes
retro_dnov_101, retro_dnov_1617, retro_dnov_1764, retro_dnov_628, retro_dnov_94,
Equus caballus ENSECAG00000016434 ortholog_one2many 1 retrogene
retro_ecab_99,
Erinaceus europaeus ENSEEUG00000010446 ortholog_one2one 2 retrogenes
retro_eeur_306, retro_eeur_361,
Echinops telfairi ENSETEG00000016893 ortholog_one2one 2 retrogenes
retro_etel_1196, retro_etel_176,
Homo sapiens ENSG00000006451 other_paralog 2 retrogenes
retro_hsap_1136, retro_hsap_3707,
Homo sapiens ENSG00000127314 within_species_paralog 2 retrogenes
retro_hsap_3338, retro_hsap_4234,
Homo sapiens ENSG00000133703 other_paralog 1 retrogene
retro_hsap_3474,
Myotis lucifugus ENSMLUG00000010571 ortholog_one2one 3 retrogenes
retro_mluc_2311, retro_mluc_2312, retro_mluc_2313,
Monodelphis domestica ENSMODG00000001323 ortholog_one2many 3 retrogenes
retro_mdom_1327, retro_mdom_139, retro_mdom_1777,
Mus musculus ENSMUSG00000068798 ortholog_one2one 2 retrogenes
retro_mmus_1963, retro_mmus_3027,
Nomascus leucogenys ENSNLEG00000004018 ortholog_one2one 1 retrogene
retro_nleu_1069,
Ochotona princeps ENSOPRG00000003999 ortholog_one2one 3 retrogenes
retro_opri_321, retro_opri_460, retro_opri_875,
Pongo abelii ENSPPYG00000001028 ortholog_one2one 1 retrogene
retro_pabe_1132,
Pan troglodytes ENSPTRG00000001102 ortholog_one2one 1 retrogene
retro_ptro_937,
Rattus norvegicus ENSRNOG00000032463 ortholog_one2one 3 retrogenes
retro_rnor_1147, retro_rnor_1494, retro_rnor_1639,
Ictidomys tridecemlineatus ENSSTOG00000027847 ortholog_one2one 1 retrogene
retro_itri_81,
Tarsius syrichta ENSTSYG00000004521 ortholog_one2one 3 retrogenes
retro_tsyr_1546, retro_tsyr_1829, retro_tsyr_2140,
Vicugna pacos ENSVPAG00000010033 ortholog_one2one 1 retrogene
retro_vpac_491,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1364 89.80 53.26
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Download FASTA sequences of all ENSG00000116473 retrocopies