Parental gene: | PDCL3, ENSG00000115539 |
| Aliases: | None |
| Description: | phosducin-like 3 [Source:HGNC Symbol;Acc:28860] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:101179151..101193197(+) |
>ENSG00000115539
ATGCAGGACCCCAACGCAGACACTGAATGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGGAAAGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCGCATCCTCCAGCAGTCAGTGGTGAAAACATATGAAGATATGACTTTGG
AAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCGGAGACTGGCT
GAGTGGAAAGCAACTAAACTGAAGAATAAATTCGGAGAAGTTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTAC
CAAAGCTGGCGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCAT
GAACCTGACAAGAGATGAGTTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACAGACCTGGAGGAAAACCCTAAGA
AGCCGATTGAAGACGTGTTGCTGTCCTCAGTGCGGCGCTCTGTCCTCATGAAGAGGGACAGCGATTCCGAGGGTGACTGA
ATGCAGGACCCCAACGCAGACACTGAATGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGGAAAGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCGCATCCTCCAGCAGTCAGTGGTGAAAACATATGAAGATATGACTTTGG
AAGAGCTGGAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCGGAGACTGGCT
GAGTGGAAAGCAACTAAACTGAAGAATAAATTCGGAGAAGTTTTGGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTAC
CAAAGCTGGCGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCAT
GAACCTGACAAGAGATGAGTTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACAGACCTGGAGGAAAACCCTAAGA
AGCCGATTGAAGACGTGTTGCTGTCCTCAGTGCGGCGCTCTGTCCTCATGAAGAGGGACAGCGATTCCGAGGGTGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 4 .60 RPM |
| bodymap2_lung | 7 .77 RPM |
| bodymap2_breast | 20 .95 RPM |
| bodymap2_adipose | 17 .47 RPM |
| bodymap2_adrenal | 25 .83 RPM |
| bodymap2_skeletal_muscle | 18 .24 RPM |
| bodymap2_thyroid | 21 .54 RPM |
| bodymap2_prostate | 37 .01 RPM |
| bodymap2_colon | 33 .49 RPM |
| bodymap2_testis | 37 .12 RPM |
| bodymap2_brain | 11 .06 RPM |
| bodymap2_heart | 14 .07 RPM |
| bodymap2_white_blood_cells | 15 .14 RPM |
| bodymap2_lymph_node | 9 .85 RPM |
| bodymap2_ovary | 29 .26 RPM |
| bodymap2_kidney | 17 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000002226 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010160 | ortholog_one2one | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000012397 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000000224 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016446 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000001489 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026078 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014393 | ortholog_one2one | 8 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001469 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015138 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000011600 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000006242 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_151 | 84.58 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1132 | 88.32 | 82.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_2684 | 94.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_2757 | 85.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3535 | 91.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3961 | 87.79 | 54.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_4102 | 87.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000115539 retrocopies