Parental gene: | PDCL3, ENSCJAG00000010160 |
| Aliases: | None |
| Description: | phosducin-like 3 [Source:HGNC Symbol;Acc:28860] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:4854915..4865852(+) |
>ENSCJAG00000010160
ATGCAGGACCCCAACACAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGCATCTTGCCCCCCAAGGAAAGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCACATGGTCCAGCAGTCAGTGGTGACAACATATGAAGATATGACTTTGG
AAGAGCTGAAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGAGCTATTGAAATGTACAGACGGCAGAGACTGGCT
GAGTGGAAAGCAACTAAACTGAAGAATAAATTTGGAGAAGTTTTAGAGATCTCAGGGAAGGATTATGTTCAAGAAGTAAC
CAAAGCCGGTGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCTCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGCAAGTTTCCTGATGTCAAGTTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCACGATATTTGTTTACCTGGAAGGTGATATCAAGGCTCAGTTTATCGGCCCTCTGGTGTTTGGTGGCAT
GAACCTGACAAGAGATGAGTTGGAGTGGAAACTGTCTGAATCTGGAGCAGTTAAGACGGACTTGGAGGAAAACCCTAAGA
AGCAGATTGAAGACGTGTTGCTGTCCTCAGTGCGGCGTTCTGTCCCCACGTGGAGGGACAGTGATTCCGACGGGGACTGA
ATGCAGGACCCCAACACAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGCATCTTGCCCCCCAAGGAAAGTCTGAA
AGAATTGGAAGAGGAGGCAGAAGAGGAGCAGCACATGGTCCAGCAGTCAGTGGTGACAACATATGAAGATATGACTTTGG
AAGAGCTGAAGGATCATGAAGACGAGTTTAATGAGGAGGATGAACGAGCTATTGAAATGTACAGACGGCAGAGACTGGCT
GAGTGGAAAGCAACTAAACTGAAGAATAAATTTGGAGAAGTTTTAGAGATCTCAGGGAAGGATTATGTTCAAGAAGTAAC
CAAAGCCGGTGAGGGCTTGTGGGTCATCTTGCACCTTTACAAACAAGGAATTCCTCTCTGTGCCCTGATAAATCAGCACC
TCAGTGGACTTGCCAGCAAGTTTCCTGATGTCAAGTTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCTGAT
AGGAATCTGCCCACGATATTTGTTTACCTGGAAGGTGATATCAAGGCTCAGTTTATCGGCCCTCTGGTGTTTGGTGGCAT
GAACCTGACAAGAGATGAGTTGGAGTGGAAACTGTCTGAATCTGGAGCAGTTAAGACGGACTTGGAGGAAAACCCTAAGA
AGCAGATTGAAGACGTGTTGCTGTCCTCAGTGCGGCGTTCTGTCCCCACGTGGAGGGACAGTGATTCCGACGGGGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 8 .07 RPM |
| SRP051959_skeletal_muscle | 8 .95 RPM |
| SRP051959_lymph_node | 6 .89 RPM |
| SRP051959_lung | 8 .90 RPM |
| SRP051959_liver | 4 .14 RPM |
| SRP051959_kidney | 14 .22 RPM |
| SRP051959_heart | 14 .07 RPM |
| SRP051959_colon | 10 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000002226 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000012397 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000000224 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000115539 | ortholog_one2one | 7 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016446 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000001489 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026078 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014393 | ortholog_one2one | 8 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001469 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015138 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000011600 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000006242 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1486 | 80.43 | 96.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1599 | 80.65 | 51.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2055 | 86.17 | 78.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010160 retrocopies