Parental gene:

GTF3A, ENSFCAG00000006982

Aliases:None
Description:general transcription factor IIIA [Source:HGNC Symbol;Acc:4662]
Organism:Cat (Felis catus)
Coordinates:A1:6962973..6975357(+)


>ENSFCAG00000006982
NNNNNNNNNNNNNNNNNNNNGGCGTGGAAGCTAGACGCGCACCTGTGCAAGCACACGGGGGAGAGACCGTTTGTTTGTGA
CCGTGAAGGGTGTGGCAAAGCCTTCGTCAGGGACTACCATCTGACCCGCCACGTCCTGATTCACACTGGGGAAAAGCCAT
TTGTTTGTACAGCTAGTGGCTGTGATCAGAAATTCAACACAAAATCAAACTTGAAGAAACATTTTGAACGCAAACATGAA
AATCAGCAAAAACAATATGTATGCACTTTTGAAGGGTGTGAGAAGGCCTTTAAGAAACACCAGCAGCTGAGGACCCATCA
GTGCCAGCACACCAGTGAGCCACTGTTCAAGTGTGCCCATGAGGGATGTGGGAAACACTTCGCCTCCCGCAGCCGGCTGA
AGAGACACGGGAAGGTCCACGAGGGCTACGTCTGCAAAAAAGAATGTTCCTTCGTGGCAAAAACGTGGACAGAGCTTCTG
AAACACATGAGGGAAGCCCATAAAGAGGCCGTAAGATGTGAAGTCTGCCAGAAAACCTTTAAACGCAAGGATTACCTGAA
GCAACATATGAAGACTCACGCCCCGGAGAGGGAGGTGTGCCGGTGTCCCAGGGAAGGCTGTGGTAGGACCTACACGACGG
TCTTTAATCTCCAGAGCCACATTCTCTCTTTTCACGAGGAAAGGCGCCCATTCACCTGTGAGCACGCCGGCTGCGGCAAA
ACGTTCGCAATGAAGCAAAGTCTCACTAGGCACGCCGTTGTGCATGACCCTGACAAGAAGAAAATGAACCTCAAAGTAAA
ACCGTCTCGTGAAAAACGGAGTTTGGCCTCTCGTCTCAGTGGATACATTCCTCCTAAAAAGAAACAAGGACAAAGCTCAT
CTCTGCCTACAAACGGAGAGTCACTGAACTGTACTGAAGGCGGGGTGCTCTCGACGGTCGCGATACTTACCCTCAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 24 .56 RPM
SRP017611_kidney 24 .12 RPM
SRP017611_brain 19 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019373 ortholog_one2one 1 retrogene
retro_cjac_3066,
Equus caballus ENSECAG00000014803 ortholog_one2one 1 retrogene
retro_ecab_866,
Gasterosteus aculeatus ENSGACG00000003107 ortholog_one2many 1 retrogene
retro_gacu_6,
Gorilla gorilla ENSGGOG00000008407 ortholog_one2one 1 retrogene
retro_ggor_2622,
Microcebus murinus ENSMICG00000014763 ortholog_one2one 1 retrogene
retro_mmur_368,
Macaca mulatta ENSMMUG00000009029 ortholog_one2one 1 retrogene
retro_mmul_1632,
Nomascus leucogenys ENSNLEG00000000331 ortholog_one2one 2 retrogenes
retro_nleu_1134, retro_nleu_214,
Oreochromis niloticus ENSONIG00000014134 ortholog_one2many 1 retrogene
retro_onil_8,
Vicugna pacos ENSVPAG00000004995 ortholog_one2one 1 retrogene
retro_vpac_456,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_426 56.07 53.92
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Download FASTA sequences of all ENSFCAG00000006982 retrocopies