Parental gene:

GTF3A, ENSCJAG00000019373

Aliases:None
Description:general transcription factor IIIA [Source:HGNC Symbol;Acc:4662]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:140424475..140437768(+)


>ENSCJAG00000019373
CTGGATCCGCCACCCGTGGTCGCTGAGTCGGTTTTGTCCCTGACCGTCGCCGACGCGTTCATCGCAGCTGGCGAGAGCTC
AACTCCGTCGCCGCTGCACCCCACGCCGCCGCACCCCACGCTTCCCAGGAGGTTCATCTGCTCCTTCCCCGACTGCAGCG
CCAATTACAACAAGGCCTGGAAGCTTGACGCGCACCTGTGCAAGCACACGGGGGAGAGACCGTTTGTTTGTGACTATGAA
GGGTGCGGCAAGGCCTTCATCAGGGACTACCATCTGAGCCGCCACATCCTGATTCACACTGGAGAAAAGCCGTTTGTTTG
TACAGCTAATGGCTGTGATCAAAAATTCAACACAAAATCAAACTTGAAGAAACATTTTGAACGCAAACATGAAAATCAAC
AGAAACAATATGTATGCCATTTTGAAGGTTGTAAGAAGACCTTTAAGAAACATCAGCAGCTGAAAATCCATCAGTGCCAG
CATACCGGTGAACCTCTGTTCAAGTGCACCCAGGAAGGATGTGGGAAGCACTTTGCATCACCCAGCAAGCTGAAACGACA
TGCCAAGGCCCATGAGGGCTATGTATGTCAAAAAGGATGTTGCTTTGTGGCAAAAACATGGACAGAACTTCTGAAACATG
TGAGAGAAACCCATAAAGAGGAAATTCTATGTGAAATATGCCAGAAAACATTTAAACGCAAAGATTACCTTAAGCAACAC
ATGAAAACTCATGCCCCCGAAAGGGATGTGTGCCGCTGTCCAAGAGAAGGCTGTGGAAGAACCTACACAACTGTGTTTAA
TCTCCAAAGCCATATCCTCTCCTTTCATGAGGAAAGGCGCCCTTTTGTGTGTGAACATGCTGGCTGTGGCAGAACATTTG
CAATGAAACAAAGTCTCACTAGGCATGCGGTTGTCCATGATCCTGACAAGAAGAAAATGAACCTCAAAGTAAAAAAAGCT
CGTGAAAAACGGAGTTTGGCCTCTCGTCTCAGTGGATATATCCCTCCCAAAAGGAAACAAGAGCAAGGCTTATCTTTGTG
TCAAAACGGAGAGTCACCCAACTGTGTGGAAGAAAATGTGCTCTCAACAGTTGCAGTACTAACCCTCAGTGAAGAACCGC
ACTGCGCTGTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 14 .58 RPM
SRP051959_skeletal_muscle 17 .27 RPM
SRP051959_lymph_node 15 .14 RPM
SRP051959_lung 10 .59 RPM
SRP051959_liver 31 .30 RPM
SRP051959_kidney 21 .17 RPM
SRP051959_heart 8 .45 RPM
SRP051959_colon 15 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000014803 ortholog_one2one 1 retrogene
retro_ecab_866,
Felis catus ENSFCAG00000006982 ortholog_one2one 1 retrogene
retro_fcat_426,
Gasterosteus aculeatus ENSGACG00000003107 ortholog_one2many 1 retrogene
retro_gacu_6,
Gorilla gorilla ENSGGOG00000008407 ortholog_one2one 1 retrogene
retro_ggor_2622,
Microcebus murinus ENSMICG00000014763 ortholog_one2one 1 retrogene
retro_mmur_368,
Macaca mulatta ENSMMUG00000009029 ortholog_one2one 1 retrogene
retro_mmul_1632,
Nomascus leucogenys ENSNLEG00000000331 ortholog_one2one 2 retrogenes
retro_nleu_1134, retro_nleu_214,
Oreochromis niloticus ENSONIG00000014134 ortholog_one2many 1 retrogene
retro_onil_8,
Vicugna pacos ENSVPAG00000004995 ortholog_one2one 1 retrogene
retro_vpac_456,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3066 58.72 57.82
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Download FASTA sequences of all ENSCJAG00000019373 retrocopies