Parental gene: | EXOSC1, ENSEEUG00000005647 |
| Aliases: | None |
| Description: | exosome component 1 [Source:HGNC Symbol;Acc:17286] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_418:149351..166355(-) |
>ENSEEUG00000005647
ATGGCGCCGCCCGTGAGGTACTGCATCCCCGGAGAACGTCTGTGTAACTTGGAGGAAGGGAGCCCGGGCAGCGGCACCTA
CACCCGGCATGGTTACATCTTTTCCTCACTTGCTGGTTGCCTGACCAAAAGCAGCGAGAACGGCGCGCTTCCCATTGTGT
CTGTCACAAGAGAAACAGAGTCCCAATTACTGCCAGATGTGGGGGCTATAGTAACCTGTAAGGTCTCTAGCATCAATTCA
CGATTTGCCAAAGTACACATCCTCTATGTGGGGTCCACACCACTTAAGAACTCTTTTCGAGGAACTATCCGCAAGGAAGA
TGTTCGAGCTACTGAAAAAGACAAGGTTGAAATTTATAAGAGTTTCCGCCCAGGTGACATTGTCTTGGCCAAAGTGATTT
CCCTAGGTGATGCACAGTCCAATTACCTCCTGACCACTGCCGAAAATGAGCTGGGGGTAGTGGTGGCCCACAGTGAGTCA
GGTGTCCAGATGGATCCCATCAGCTGGTGTGAGATGCAGTGCCCTAAAACCCACACTAAAGAATTTCGGAAAGTTGCCCG
GGTGCAGCCTGAGTTCTTGCAGACCTAA
ATGGCGCCGCCCGTGAGGTACTGCATCCCCGGAGAACGTCTGTGTAACTTGGAGGAAGGGAGCCCGGGCAGCGGCACCTA
CACCCGGCATGGTTACATCTTTTCCTCACTTGCTGGTTGCCTGACCAAAAGCAGCGAGAACGGCGCGCTTCCCATTGTGT
CTGTCACAAGAGAAACAGAGTCCCAATTACTGCCAGATGTGGGGGCTATAGTAACCTGTAAGGTCTCTAGCATCAATTCA
CGATTTGCCAAAGTACACATCCTCTATGTGGGGTCCACACCACTTAAGAACTCTTTTCGAGGAACTATCCGCAAGGAAGA
TGTTCGAGCTACTGAAAAAGACAAGGTTGAAATTTATAAGAGTTTCCGCCCAGGTGACATTGTCTTGGCCAAAGTGATTT
CCCTAGGTGATGCACAGTCCAATTACCTCCTGACCACTGCCGAAAATGAGCTGGGGGTAGTGGTGGCCCACAGTGAGTCA
GGTGTCCAGATGGATCCCATCAGCTGGTGTGAGATGCAGTGCCCTAAAACCCACACTAAAGAATTTCGGAAAGTTGCCCG
GGTGCAGCCTGAGTTCTTGCAGACCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 5 .95 RPM |
| SRP017611_kidney | 9 .94 RPM |
| SRP017611_brain | 4 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006477 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000007983 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002246 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009228 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000034321 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000011898 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016259 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000003372 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000048708 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006615 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_270 | 96.92 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_438 | 74.80 | 62.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_464 | 74.36 | 77.95 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000005647 retrocopies