Parental gene:

ENSECAG00000017343

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:X:18300278..18315375(+)


>ENSECAG00000017343
ATGGCTGGGGGCGAGGCTGGAGTGACTCTAGGGCAGCCGCATCTTTCTCGTCAGGATCTCGCCACCTTGGATGTTACCAA
GTTGACGCCACTTTCACACGAAGTTATCAGCAGACAAGCCACAATTAATATAGGTACAATTGGTCATGTAGCTCATGGCA
AATCCACAGTTGTAAAAGCTATTTCTGGAGTTCACACTGTCAGGTTCAAAAATGAACTAGAAAGAAACATTACAATCAAA
CTTGGATATGCTAATGCTAAGATTTATAAACTTGATGACCCAAGTTGTCCTCGGCCAGAATGTTACAGATCCTGTGGAAG
TAGTACACCCGATGAGTTTCCTACAGACATTCCAGGGACCAAAGGGAACTTCAGATTAGTCAGACATGTTTCCTTTGTTG
ACTGTCCTGGCCACGATATTTTGATGGCTACTATGCTGAACGGTGCAGCAGTAATGGATGCGGCTCTTCTGTTGATAGCT
GGTAATGAGTCTTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCTATAGAAATCATGAAACTGAAGCATATTTTGAT
TCTACAAAATAAAATTGATTTGGTAAAAGAAAGCCAGGCTAAAGAACAATATGAACAGATCCTTGCATTTGTACAAGGTA
CAGTAGCAGAAGGCGCTCCTATTATTCCAATTTCTGCTCAGTTGAAATACAATATTGAAGTTGTCTGTGAGTACATAGTA
AAGAAAATTCCAGTACCCCCAAGAGACTTTACTTCCGAACCTCGACTTATTGTTATTAGATCCTTTGATGTCAACAAACC
TGGCTGTGAAGTTGATGACCTTAAGGGGGGTGTAGCTGGTGGCAGTATTCTAAAAGGAGTATTAAAGGTGGGCCAGGAAA
TAGAAGTCAGACCTGGTATTGTTTCCAAAGATAGCGAAGGAAAGCTCATGTGTAAACCAATCTTTTCCAAAATTGTATCC
CTCTTCGCAGAACATAATGATCTTCAGTATGCTGCTCCAGGAGGTCTTATTGGAGTTGGAACAAAAATTGACCCCACTTT
GTGCCGGGCTGACAGAATGGTGGGGCAGGTACTTGGTGCAGTTGGAGCTTTACCTGAAATCTTCACCGAGTTGGAAATCT
CCTATTTCCTGCTGAGACGGCTTCTAGGTGTACGCACTGAGGGAGACAAGAAAGCAGCAAAGGTGCAAAAGCTATCTAAG
AATGAAGTGCTCATGGTAAACATAGGATCCCTGTCGACAGGAGGAAGAGTTAGTGCAGTCAAGGCCGATTTGGGCAAAAT
CGTTTTGACTAATCCTGTGTGCACAGAAGTAGGAGAAAAAATTGCCCTTAGCCGAAGAGTTGAGAAACATTGGCGTTTAA
TTGGTTGGGGTCAAATAAGAAGAGGAGTGACAATCAAGCCAACAGTAGATGATGACTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 39 .01 RPM
SRP021940_embryo 70 .15 RPM
SRP021940_cerebellum 28 .82 RPM
SRP021940_testis 7 .35 RPM
SRP021940_placental_villous 67 .98 RPM
SRP021940_articular_cartilage 46 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014337 ortholog_many2many 1 retrogene
retro_btau_1497,
Dasypus novemcinctus ENSDNOG00000018584 ortholog_one2many 1 retrogene
retro_dnov_1454,
Echinops telfairi ENSETEG00000000341 ortholog_one2many 4 retrogenes
retro_etel_1061, retro_etel_126, retro_etel_1590, retro_etel_2017,
Loxodonta africana ENSLAFG00000011052 ortholog_one2many 1 retrogene
retro_lafr_971,
Macaca mulatta ENSMMUG00000006979 ortholog_many2many 4 retrogenes
retro_mmul_1965, retro_mmul_2258, retro_mmul_473, retro_mmul_713,
Monodelphis domestica ENSMODG00000007541 ortholog_one2many 2 retrogenes
retro_mdom_1650, retro_mdom_732,
Mus musculus ENSMUSG00000035150 possible_ortholog 2 retrogenes
retro_mmus_1408, retro_mmus_3433,
Pongo abelii ENSPPYG00000020194 ortholog_many2many 1 retrogene
retro_pabe_10,
Pteropus vampyrus ENSPVAG00000002533 ortholog_one2many 1 retrogene
retro_pvam_936,
Sus scrofa ENSSSCG00000012178 possible_ortholog 1 retrogene
retro_sscr_805,
Ictidomys tridecemlineatus ENSSTOG00000007144 possible_ortholog 1 retrogene
retro_itri_582,
Tursiops truncatus ENSTTRG00000012474 ortholog_one2many 4 retrogenes
retro_ttru_1080, retro_ttru_1638, retro_ttru_617, retro_ttru_686,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_810 90.70 100.00
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Download FASTA sequences of all ENSECAG00000017343 retrocopies