Parental gene: | RPS24, ENSECAG00000016939 |
| Aliases: | None |
| Description: | ribosomal protein S24 [Source:HGNC Symbol;Acc:10411] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 1:65233667..65238578(+) |
>ENSECAG00000016939
AATGACACAGTAACTATCCGGACCCGGAAGTTCATGACCAACCGACTACTTCAGCGGAAACAAATGGTCATAGATGTCCT
TCACCCTGGGAAGGCAACGGTACCCAAGACAGAAATTCGGGAAAAACTAGCCAAGATGTACAAGACCACACCAGATGTCA
TCTTTGTATTTGGATTCAGAACCCATTTTGGTGGTGGGAAGACAACTGGCTTTGGCATGATTTATGATTCCTTGGATTAT
GCAAAGAAAAATGAACCAAAACATAGACTTGCACGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAACAACGAAA
GGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTCGGTGCTGGCAAAAAGAAGGAGTAA
AATGACACAGTAACTATCCGGACCCGGAAGTTCATGACCAACCGACTACTTCAGCGGAAACAAATGGTCATAGATGTCCT
TCACCCTGGGAAGGCAACGGTACCCAAGACAGAAATTCGGGAAAAACTAGCCAAGATGTACAAGACCACACCAGATGTCA
TCTTTGTATTTGGATTCAGAACCCATTTTGGTGGTGGGAAGACAACTGGCTTTGGCATGATTTATGATTCCTTGGATTAT
GCAAAGAAAAATGAACCAAAACATAGACTTGCACGACATGGCCTGTATGAGAAGAAAAAGACCTCAAGAAAACAACGAAA
GGAACGCAAGAACAGAATGAAGAAAGTCAGGGGGACTGCGAAGGCCAATGTCGGTGCTGGCAAAAAGAAGGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 221 .32 RPM |
| SRP021940_embryo | 346 .31 RPM |
| SRP021940_cerebellum | 178 .44 RPM |
| SRP021940_testis | 165 .93 RPM |
| SRP021940_placental_villous | 206 .78 RPM |
| SRP021940_articular_cartilage | 363 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Gadus morhua | ENSGMOG00000012595 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000005951 | ortholog_one2one | 7 retrogenes | |
| Monodelphis domestica | ENSMODG00000025091 | ortholog_one2one | 3 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000006329 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000008090 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000010328 | possible_ortholog | 8 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_239 | 51.04 | 72.52 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_398 | 90.00 | 98.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_422 | 90.00 | 98.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_514 | 79.44 | 80.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_746 | 74.05 | 97.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000016939 retrocopies