RetrogeneDB ID:

retro_mmur_132

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_1401:33566..33955(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS24
Ensembl ID:ENSMICG00000005951
Aliases:None
Description:ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]


Retrocopy-Parental alignment summary:






>retro_mmur_132
ATGAACGACACAGTAACTATCTGGACCAGGAAGTTCATGACCAATTGATACTTCAGAGGAAACAAATGGGCATCAGCATC
CTTTACCCTGGGAAGGCAACAGTACCAAGGACAGAAATTAGGGAAAATCTAGCCAAAATGTACAAGACTACACCAAATGT
CATCTTTGTATTTGGATTCAGAACTCACTTGGTGGTGGCAAGACAAATTGGCTTTGGCATGATTTATGATTCCTTGGTTT
ATGCAAAGAAAAATTAACCCAAACATAGACTTGCAAGGGATGGGCTATACAAGGAGAAAAAGACATCAAGGATATAGCGA
AAGGAACTCAAGAACAGAATGAAAAAAGTCAAGGGGACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAG

ORF - retro_mmur_132 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.69 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMNDTVTIRTRKFMTN-RLLQRKQMVMMVLRPGKATSPKTEIREKLATRY-TPPDAIFVFGFRTHF-GGGK
MNDTVTI.TRKFMTN...LQRKQM....L.PGKAT.P.TEIRE.LA..Y.T.P..IFVFGFRTH..GGGK
RetrocopyMNDTVTIWTRKFMTN<LILQRKQMGISILYPGKATVPRTEIRENLAKMYKTTPNVIFVFGFRTHL<GGGK
ParentalTT-GFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK
T..GFGMIYDSL.YAKKN.PKHRLAR.GLY..KKTSR..RKE.KNRMKKV.GTAKANVGAGKK
RetrocopyTN>GFGMIYDSLVYAKKN*PKHRLARDGLYKEKKTSRI*RKELKNRMKKVKGTAKANVGAGKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Microcebus murinus was not studied using RNA-Seq expression data.