Parental gene: | ENSECAG00000012620 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 11:20257897..20262777(-) |
>ENSECAG00000012620
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAACTTGATAGTTTTTTGAAGGAACCAATCCTAAACATCCATG
ACCTAACTCAGATCCACTCAGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCACGATGGACTGGAC
GGTCCCACTTACAAGAAGCGAAGGTTGGATGAATGTGAAGAGGCCTTCCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTTAAAAGCAACCAGCAGCTCGTAGACATTATTGAGAAAGTGAAACCTGAGATCCGGCTGCTGATCGAGAAATGCA
ACACGGTCAAAATGTGGGTACAGCTTCTGATTCCTAGGATAGAAGATGGGAACAACTTTGGGGTGTCCATTCAGGAGGAG
ACAGTTGCAGAACTAAGAACCGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAAT
ATATCAGCCTTCGACTCATCATATCCGAGCTAAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCCGAGACACTGTACTGA
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAACTTGATAGTTTTTTGAAGGAACCAATCCTAAACATCCATG
ACCTAACTCAGATCCACTCAGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCACGATGGACTGGAC
GGTCCCACTTACAAGAAGCGAAGGTTGGATGAATGTGAAGAGGCCTTCCAAGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTTAAAAGCAACCAGCAGCTCGTAGACATTATTGAGAAAGTGAAACCTGAGATCCGGCTGCTGATCGAGAAATGCA
ACACGGTCAAAATGTGGGTACAGCTTCTGATTCCTAGGATAGAAGATGGGAACAACTTTGGGGTGTCCATTCAGGAGGAG
ACAGTTGCAGAACTAAGAACCGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAAT
ATATCAGCCTTCGACTCATCATATCCGAGCTAAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCCGAGACACTGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 5 .76 RPM |
| SRP021940_embryo | 9 .72 RPM |
| SRP021940_cerebellum | 9 .40 RPM |
| SRP021940_testis | 26 .66 RPM |
| SRP021940_placental_villous | 6 .78 RPM |
| SRP021940_articular_cartilage | 5 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000013688 | ortholog_many2many | 2 retrogenes | |
| Bos taurus | ENSBTAG00000019918 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000013111 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012552 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000016855 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000131467 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000013446 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010027 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000015986 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008372 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009225 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017385 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000028833 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_29 | 98.03 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_827 | 52.52 | 54.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000012620 retrocopies