Parental gene:

PSME3, ENSBTAG00000019918

Aliases:None
Description:None
Organism:Cow (Bos taurus)
Coordinates:19:43500417..43505335(+)


>ENSBTAG00000019918
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAGCGGATCACAAGTGAGGCAGA
AGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAACTTGATAGTTTTTTGAAGGAACCAATCCTAAACATCCATG
ACCTAACTCAGATCCACTCAGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAACAGCCATGATGGACTGGAT
GGTCCTACTTACAAGAAGCGAAGATTGGATGAATGTGAAGAGGCCTTCCAGGGAACCAAGGTGTTTGTGATGCCCAATGG
GATGCTAAAAAGCAACCAGCAGCTGGTGGACATTATTGAGAAAGTGAAGCCTGAGATCCGGCTGCTGATTGAGAAATGCA
ACACGGTCAAAATGTGGGTACAACTCCTGATTCCTAGGATAGAAGATGGCAACAACTTTGGGGTGTCCATTCAGGAGGAA
ACAGTTGCAGAACTAAGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGC
CAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAAGACTATCGTCGCACCGTGACAGAGATTGACGAGAAAGAAT
ATATCAGCCTTCGGCTCATCATATCAGAGCTAAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATTGAG
AAGATCAAAAGGCCCCGGAGCAGCAATGCAGAGACACTGTACTGA

Library Parental gene expression (RPM)
SRP017611_brain 37 .82 RPM
SRP017611_kidney 36 .45 RPM
SRP017611_liver 23 .41 RPM
ERP005899_muscle 30 .93 RPM
ERP005899_liver 13 .48 RPM
SRP030211_testis 88 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013688 ortholog_one2many 2 retrogenes
retro_acar_118, retro_acar_37,
Bos taurus ENSBTAG00000021395 within_species_paralog 1 retrogene
retro_btau_1189,
Callithrix jacchus ENSCJAG00000013111 ortholog_one2one 1 retrogene
retro_cjac_2307,
Cavia porcellus ENSCPOG00000012552 ortholog_one2one 1 retrogene
retro_cpor_1204,
Equus caballus ENSECAG00000012620 ortholog_one2many 2 retrogenes
retro_ecab_29, retro_ecab_827,
Homo sapiens ENSG00000131467 ortholog_one2one 1 retrogene
retro_hsap_245,
Loxodonta africana ENSLAFG00000013446 ortholog_one2one 1 retrogene
retro_lafr_725,
Mustela putorius furo ENSMPUG00000010027 ortholog_one2one 1 retrogene
retro_mputfur_619,
Oryctolagus cuniculus ENSOCUG00000015986 ortholog_one2one 1 retrogene
retro_ocun_641,
Pongo abelii ENSPPYG00000008372 ortholog_one2one 1 retrogene
retro_pabe_413,
Pan troglodytes ENSPTRG00000009225 ortholog_one2one 1 retrogene
retro_ptro_212,
Sus scrofa ENSSSCG00000017385 ortholog_one2one 1 retrogene
retro_sscr_784,
Ictidomys tridecemlineatus ENSSTOG00000028833 ortholog_one2one 1 retrogene
retro_itri_153,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_941 63.46 81.10
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2. retro_btau_1249 70.89 61.02
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Download FASTA sequences of all ENSBTAG00000019918 retrocopies