Parental gene:

SOD2, ENSECAG00000011797

Aliases:SOD2, Mn-SOD
Description:superoxide dismutase [Source:RefSeq peptide;Acc:NP_001075986]
Organism:Horse (Equus caballus)
Coordinates:31:2049321..2057348(-)


>ENSECAG00000011797
CTCTCTTCCAGCACGAGCAGGAAGCTGGTGCCAGCTCTGGGGTCTCTGGGGTCCCGGCAGAAGCACAGCCTCCCCGACTT
GCAGTATGATTATGGCGCTCTGGAGCCCTACATCAACGCCCAGATCATGCAGCTGCACCACAGCAAGCACCACGCGGCCT
ATGTGAACAACCTGAACGTCACCGAGGAGAAGTACCAGGAGGCGCTGGCCAAGGGGGACGTGACAGCTCAGATTGCTCTG
CAGCCTGCACTCAAGTTCAATGGTGGAGGCCATATCAATCATACCATTTTCTGGACAAACCTGAGCCCCAATGGCGGGGG
AGAACCCAAAGGGGAATTGCTGGACGCCATCAAACGTGACTTTGGTTCCTTCGACAAATTTAAAGAGAAGTTGACTGCTG
TATCGGCTGGTGTCCAAGGCTCGGGTTGGGGTTGGCTTGGTTTCAATAAGGACCAGGGACGCCTCCAGATTGTTGCCTGT
CCTAACCAGGATCCCCTGCAGGGAACAACAGGTCTTATTCCCCTGCTGGGGATTGACGTGTGGGAGCACGCTTATTACCT
TCAGTATAAAAATGTCAGGCCTGATTATCTGAAAGCCATTTGGAATGTGATCAACTGGGAGAATGTATCTGAGAGATACA
TGGCTTGCAAAAAGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 112 .77 RPM
SRP021940_embryo 13 .94 RPM
SRP021940_cerebellum 34 .90 RPM
SRP021940_testis 12 .53 RPM
SRP021940_placental_villous 53 .60 RPM
SRP021940_articular_cartilage 63 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015466 ortholog_one2many 1 retrogene
retro_amel_786,
Canis familiaris ENSCAFG00000000671 ortholog_one2many 1 retrogene
retro_cfam_1795,
Choloepus hoffmanni ENSCHOG00000003215 ortholog_one2many 4 retrogenes
retro_chof_1952, retro_chof_1966, retro_chof_2620, retro_chof_937,
Callithrix jacchus ENSCJAG00000011664 ortholog_one2many 1 retrogene
retro_cjac_3032,
Dasypus novemcinctus ENSDNOG00000007907 ortholog_one2many 1 retrogene
retro_dnov_1653,
Echinops telfairi ENSETEG00000016400 ortholog_one2many 1 retrogene
retro_etel_731,
Felis catus ENSFCAG00000002843 ortholog_one2many 1 retrogene
retro_fcat_1200,
Homo sapiens ENSG00000112096 ortholog_one2many 1 retrogene
retro_hsap_430,
Gorilla gorilla ENSGGOG00000008212 ortholog_one2many 1 retrogene
retro_ggor_419,
Myotis lucifugus ENSMLUG00000012242 ortholog_one2many 1 retrogene
retro_mluc_528,
Monodelphis domestica ENSMODG00000007521 ortholog_one2many 1 retrogene
retro_mdom_373,
Mustela putorius furo ENSMPUG00000005045 ortholog_one2many 1 retrogene
retro_mputfur_1382,
Nomascus leucogenys ENSNLEG00000011061 ortholog_one2many 1 retrogene
retro_nleu_1023,
Otolemur garnettii ENSOGAG00000017100 ortholog_one2many 1 retrogene
retro_ogar_1123,
Pongo abelii ENSPPYG00000017143 ortholog_one2many 1 retrogene
retro_pabe_292,
Pan troglodytes ENSPTRG00000018757 ortholog_one2many 1 retrogene
retro_ptro_327,
Pteropus vampyrus ENSPVAG00000005302 ortholog_one2many 1 retrogene
retro_pvam_288,
Rattus norvegicus ENSRNOG00000019048 ortholog_one2many 1 retrogene
retro_rnor_2221,
Sarcophilus harrisii ENSSHAG00000014795 ortholog_one2many 1 retrogene
retro_shar_210,
Ictidomys tridecemlineatus ENSSTOG00000008738 ortholog_one2many 1 retrogene
retro_itri_1432,
Tupaia belangeri ENSTBEG00000002100 ortholog_one2many 1 retrogene
retro_tbel_665,
Tarsius syrichta ENSTSYG00000000457 ortholog_one2many 1 retrogene
retro_tsyr_183,
Tursiops truncatus ENSTTRG00000014364 ortholog_many2many 1 retrogene
retro_ttru_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_70 93.02 98.62
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2. retro_ecab_840 62.14 64.22
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Download FASTA sequences of all ENSECAG00000011797 retrocopies