RetrogeneDB ID:

retro_pvam_288

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_236:162881..163216(-)
Located in intron of:ENSPVAG00000011653
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SOD2
Ensembl ID:ENSPVAG00000005302
Aliases:None
Description:superoxide dismutase 2, mitochondrial [Source:HGNC Symbol;Acc:11180]


Retrocopy-Parental alignment summary:






>retro_pvam_288
ATCACTCTTACCATTTTATGGACAAACCTAAGTCCTAACAATAGTGGAAAACCCAAAGGGGAGTTTCTGTAAGGCAGCAA
ATGTTACTTTGTTTCCTTTGACTAAGTTGAGAAGTTGACAGCTATATCTGTTGGCTTTCAACATTCAGATTAGGGTGGGC
TTAATCTCATTAAGTAACAAGGACACTTTCACATTGCTGCCTATTCTAATAAGGATCCATTGCAAGAAACAATAGGTCTA
TTCCATTTGGGGGGATTGATGTATGGGCATATGCTTAATGCCTTTAGTATAAAAGTGTCAGATCTCATTATCTTAAACCT
GTTTGAGATGTAATC

ORF - retro_pvam_288 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.39 %
Parental protein coverage: 50.9 %
Number of stop codons detected: 7
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalINHTIFWTNLSPNGGGEPKGELLEVIKRDFGSFAKFKEKLTTVSAGVQGSGWGWLGFNKEQGRLQIAACP
I..TI.WTNLSPN..G.PKGE.L...K..F.SF....EKLT..S.G.Q.S..G.L...K.QG...IAA..
RetrocopyITLTILWTNLSPNNSGKPKGEFL*GSKCYFVSF-D*VEKLTAISVGFQHSD*GGLNLIK*QGHFHIAAYS
ParentalNQDPLQGTTGL-IPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVI
N.DPLQ.T.GL.IP..GIDVW..A..L.YK.VR..YLK....VI
RetrocopyNKDPLQETIGL<IPFGGIDVWAYA*CL*YKSVRSHYLKPV*DVI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Pteropus vampyrus was not studied using RNA-Seq expression data.