Parental gene:

RPS8, ENSDNOG00000025236

Aliases:None
Description:ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1575:5559..99636(+)


>ENSDNOG00000025236
TTTCCTCTTTCCAGCCAGCGCCTTGCGATGGGCATCTCCCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGCAAGAG
AAAGCCCTACCACAAGAAGCGAAAGTATGAGCTAGGACGCCCGGCTGCCAACACCATTGGCCCCCGCCGCATACACACAG
TTCGTGTCCGAGGAGGCAATAAGAAGTACCGAGCCCTAAGGCTGGACGTGGGGAACTTCTCCTGGGGTTCTGAATGCTGT
ACTCGCAAAACAAGAATCATCGATGTTGTATACAATGCATCCAATAATGAGCTGGTCCGCACCAAGACTCTGGTGAAAAA
TTGTATTGTACTCATTGACAGCACACCGTACCGGCAGTGGTACGAGTCCCACTATGCTCTGCCCCTAGGCCGCAAGAAGG
GGGCCAAGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATGATGAAAGG
AAAAAGAATGCCAAGATCAGCAGTCTTCTGGAGGAGCAGTTCCAGCAGGGCAAGCTTCTTGCATGCATTGCTTCAAGGCC
AGGCCAGTGTGGCCGAGCAGATGGCTATGTGCTAGAGGGCAAGGAGCTGGAGTTCTATCAGAGGAAAATCAAGGCCCGGA
AAGGCAAATAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 666 .05 RPM
SRP012922_cerebellum 396 .60 RPM
SRP012922_heart 393 .99 RPM
SRP012922_kidney 728 .57 RPM
SRP012922_liver 389 .96 RPM
SRP012922_lung 975 .76 RPM
SRP012922_quadricep_muscle 562 .18 RPM
SRP012922_spleen 1128 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015697 ortholog_one2one 1 retrogene
retro_acar_124,
Canis familiaris ENSCAFG00000004745 ortholog_one2one 8 retrogenes
retro_cfam_1336, retro_cfam_1662, retro_cfam_1730, retro_cfam_2139, retro_cfam_2177, retro_cfam_261, retro_cfam_589, retro_cfam_791,
Callithrix jacchus ENSCJAG00000004197 possible_ortholog 5 retrogenes
retro_cjac_1068, retro_cjac_181, retro_cjac_3138, retro_cjac_6, retro_cjac_951,
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
retro_dord_429,
Felis catus ENSFCAG00000022996 possible_ortholog 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Gorilla gorilla ENSGGOG00000005645 ortholog_one2one 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Microcebus murinus ENSMICG00000008024 ortholog_one2one 4 retrogenes
retro_mmur_1180, retro_mmur_1434, retro_mmur_1501, retro_mmur_380,
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 possible_ortholog 2 retrogenes
retro_mmul_275, retro_mmul_70,
Monodelphis domestica ENSMODG00000028389 ortholog_one2one 1 retrogene
retro_mdom_998,
Nomascus leucogenys ENSNLEG00000014147 possible_ortholog 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pan troglodytes ENSPTRG00000000659 possible_ortholog 1 retrogene
retro_ptro_30,
Rattus norvegicus ENSRNOG00000018768 possible_ortholog 2 retrogenes
retro_rnor_222, retro_rnor_235,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_802 79.43 62.50
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2. retro_dnov_908 85.71 61.11
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3. retro_dnov_1717 75.21 53.70
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Download FASTA sequences of all ENSDNOG00000025236 retrocopies