RetrogeneDB ID:

retro_mluc_1634

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429876:464843..465405(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000001559
Aliases:None
Description:40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:G1NVW1]


Retrocopy-Parental alignment summary:






>retro_mluc_1634
GGTAGCAAGAGAAAGCCTTACCATAAGAAGCCAAAACATGAGCTGGGAAAGCCCTGCTGCCTACACTAAGGTTGCCCCTG
TCCCCACCGGCCGCCGCATACACAGTCTGAGTGCGGGGAAGCCACAAGAAGTACACGGTGCCTTGAGGCTGGATGTGGGC
AACTTCTCCTGGGGCTCGGAGGGCTGTACGTGCAAAATAAAGATTATCGATGTTGTCTACAATGCATCCCACTACAAAGG
GGACCGCACCAAGACCCTAGTAAAGACCTGCATTGTGCTCATTGACAGCACACTCTACCCACAGAGGTCCGAGTCCCACT
AGGCACTGGCCTGGGCCACAGGAAAGGGGTCAAGCTGACTCCTAAAGAAGAAGAGATTTTAAACAAAAAACGATCATAGA
AAATTCAGAAGAAATGTGATAAAAGGAAAAATAATGCCAAAAATCAGCCGTCCTCTAGAGGAGCCAGTCCAGCAGGGCAA
GCTTCTTGCGTTGATCACTTCAAGACCAGGCCACTGCGGCTCAACAGATGGCTTTGTGCTGGAGGGCAAGGAGCTGCAGT
TC

ORF - retro_mluc_1634 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.37 %
Parental protein coverage: 87.98 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGGKRKPYHKKRKYELGRP-AANTKIGP----RRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRII
G.KRKPYHKK.K.ELG.P.AA.TK..P....RRIH............ALRLDVGNFSWGSE.CT.K..II
RetrocopyGSKRKPYHKKPKHELGKP>AAYTKVAPVPTGRRIHSLSAGKPQEVHGALRLDVGNFSWGSEGCTCKIKII
ParentalDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWYESHYALP-LGRKKGAKLTPEEEEILNKKRSKKIQKK
DVVYNAS.....RTKTLVK.CIVL.DST.Y.Q..ESH.AL..LG..KG.KLTP.EEEILNKKRS.KIQKK
RetrocopyDVVYNASHYKGDRTKTLVKTCIVLIDSTLYPQRSESH*ALA<LGHRKGVKLTPKEEEILNKKRS*KIQKK
ParentalYDERKKNA-KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEF
.D.RK.NA.KIS..LEE..QQGKLLA.I.SRPG.CG..DG.VLEGKEL.F
RetrocopyCDKRKNNA>KISRPLEEPVQQGKLLALITSRPGHCGSTDGFVLEGKELQF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide