Parental gene:

HRAS, ENSDNOG00000015293

Aliases:None
Description:Harvey rat sarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:5173]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_114465:622..1994(+)


>ENSDNOG00000015293
ATGACGGAGTATAAGCTGGTGGTGGTGGGCGCTGGGGGCGTGGGGAAAAGCGCCCTGACCATCCAGCTGATCCAGAACCA
CTTTGTGGACGAGTACGACCCCACCATAGAGGACTCGTACCGGAAGCAGGTGGTCATCGACGGGGAGACGTGTCTGCTGG
ACATTCTGGACACGGCGGGCCAAGAGGAGTACAGCGCCATGCGAGACCAGTACATGCGCACGGGCGAGGGCTTCCTCTGC
GTGTTCGCCATCAACAACACCAAGTCCTTCGAGGACATCCATCAGTACAGGGAGCAGATCAAGCGGGTCAAGGACTCGGA
CGACGTGCCCATGGTGCTGGTGGGGAACAAGTGCGACCTGCCCGCCCGCACTGTGGACGCGAGGCAGGCCCAAGAGCTTG
CCTGCAGCTACGGCCTCCCCTACGTGGAGACGTCCGCCAAGACCCGGCAGGGCGTGGAAGACGCGTTTTACACGCTGGTG
CGGGAGATCCGGCAACACAAGTTGCGGAAGTTGAACCCCCCCGACGAGAGCGGCCCCGGCTGCGCCGACTGCAAGTGCAC
GCTGTGCTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 11 .67 RPM
SRP012922_cerebellum 17 .73 RPM
SRP012922_heart 7 .19 RPM
SRP012922_kidney 23 .00 RPM
SRP012922_liver 8 .20 RPM
SRP012922_lung 17 .72 RPM
SRP012922_quadricep_muscle 37 .73 RPM
SRP012922_spleen 9 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000007809 other_paralog 5 retrogenes
retro_dnov_101, retro_dnov_1617, retro_dnov_1764, retro_dnov_628, retro_dnov_94,
Dasypus novemcinctus ENSDNOG00000017413 within_species_paralog 1 retrogene
retro_dnov_573,
Dasypus novemcinctus ENSDNOG00000019724 other_paralog 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Echinops telfairi ENSETEG00000019899 ortholog_one2one 2 retrogenes
retro_etel_1028, retro_etel_391,
Macropus eugenii ENSMEUG00000008467 ortholog_one2one 1 retrogene
retro_meug_852,
Microcebus murinus ENSMICG00000006472 ortholog_one2one 1 retrogene
retro_mmur_948,
Rattus norvegicus ENSRNOG00000016611 ortholog_one2one 1 retrogene
retro_rnor_2941,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_154 80.72 87.83
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2. retro_dnov_1358 67.05 92.06
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3. retro_dnov_2354 68.06 98.41
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Download FASTA sequences of all ENSDNOG00000015293 retrocopies