Parental gene:

ENSCPOG00000024984

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_67:4136740..4176105(-)


>ENSCPOG00000024984
ATGGCAGGACGGCCTCATCCCTATGACAGTAACTCCAGTGATCCAGAAAATTGGGATCGGAAATTGCATAGTAGACCTCG
TAAACTTTATAAACATTCAAGTGCTTCTTCACGTGTTGCTAAAGGAGGAGTGGACAACACCAAAATGAGTCTGCATGGTG
CTAGTGGGGGACATGAGAGATCAAGAGACAGGCGAAGGTCAAGTGACAGATCACGAGATTCATCACATGAAAGAACAGAA
TCGCAGCTAACTCCGTGCATTAGAAATGTTACTTCTCCAACACGGCAGCACCATGTTGAAAGAGAAAAAGATCACAGTTC
CTCTCGTCCAAGCAGTCCTCGTCCACAAAAAGCCTCTCCGAATGGTTCATTTAGCAGTGCTGGGAACAGCAGAAACAGTA
GTCAGTCAAGCTCAGACGGTAGCTGTAAGACACCTGGGGAGATGGTATTTGTATATGAAAATGCAAAAGAAGGTGCTCGG
AATATAAGAACGTCAGAACGAGTGACATTAATAGTGGATAACACTAGATTTGTTGTAGACCCATCCATTTTTACTGCACA
GCCAAATACAATGTTGGGCAGGATGTTTGGGTCTGGCCGAGAACATAACTTTACACGTCCCAATGAGAAAGGAGAGTATG
AGGTGGCAGAAGGAATCGGTTCTACTGTATTTCGAGCTATTCTGGATTACTATAAGACAGGAATAATTCGTTGTCCTGAT
GGCATATCAATTCCTGAGCTAAGAGAAGCATGTGATTATCTCTGTATCTCTTTTGAATACAGTACTATTAAATGTAGAGA
TCTCAGTGCCCTGATGCATGAGTTGTCCAATGATGGTGCTCGTAGACAATTTGAATTTTATCTGGAAGAAATGATCCTCC
CTCTTATGGTAGCTAGTGCCCAGAGTGGGGAACGAGAATGCCATATAGTGGTGCTTACAGATGACGATGTAGTTGACTGG
GACGAAGAGTATCCACCACAGATGGGAGAAGAATATTCACAAATTATTTATAGCACAAAATTGTATAGATTTTTCAAGTA
CATCGAAAACAGAGATGTGGCCAAATCAGTTTTGAAGGAGAGGGGTCTTAAGAAAATTAGATTGGGAATAGAAGGCTATC
CTACCTACAAAGAAAAAGTAAAGAAAAGGCCTGGGGGCCGCCCAGAAGTCATTTACAACTATGTCCAAAGACCCTTTATT
CGAATGTCCTGGGAGAAGGAAGAAGGGAAGAGTCGGCATGTAGACTTCCAGTGTGTAAAGAGTAAATCTATCACCAACCT
GGCAGCAGCTGCTGCAGACATTCCCCAGGACCAGCTGGTGGTCATGCATCCTACTCCACAGGTGGATGAGCTGGACATCT
TCCCCATGCACCCTGCTTCTGGCAACAATGACCTCGATCCTGACGCACAGAACCCAATGTTG

Library Parental gene expression (RPM)
SRP017611_liver 2 .79 RPM
SRP017611_kidney 3 .45 RPM
SRP017611_brain 23 .29 RPM
SRP040447_lung 9 .05 RPM
SRP040447_skeletal_muscle 4 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Monodelphis domestica ENSMODG00000008728 ortholog_one2many 1 retrogene
retro_mdom_1020,
Mus musculus ENSMUSG00000038187 ortholog_one2many 1 retrogene
retro_mmus_3560,
Nomascus leucogenys ENSNLEG00000017691 ortholog_one2many 1 retrogene
retro_nleu_232,
Otolemur garnettii ENSOGAG00000000739 ortholog_one2many 1 retrogene
retro_ogar_3201,
Pan troglodytes ENSPTRG00000003377 ortholog_one2many 1 retrogene
retro_ptro_753,
Rattus norvegicus ENSRNOG00000014341 ortholog_one2many 2 retrogenes
retro_rnor_2220, retro_rnor_2872,
Sorex araneus ENSSARG00000000266 ortholog_one2many 1 retrogene
retro_sara_405,
Sus scrofa ENSSSCG00000013395 ortholog_one2many 2 retrogenes
retro_sscr_639, retro_sscr_640,
Tarsius syrichta ENSTSYG00000000445 ortholog_one2many 2 retrogenes
retro_tsyr_196, retro_tsyr_367,
Tursiops truncatus ENSTTRG00000013943 ortholog_one2many 1 retrogene
retro_ttru_897,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_137 71.43 58.23
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Download FASTA sequences of all ENSCPOG00000024984 retrocopies