RetrogeneDB ID: retro_tsyr_367

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_104471:2063..3096(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTBD10
• Ensembl ID: ENSTSYG00000000445
• Aliases: None
• Description: BTB (POZ) domain containing 10 [Source:HGNC Symbol;Acc:21445]

Sequence

>retro_tsyr_367
ATGGCAGAATGGCCTCATCCTTATGACAGCATCTCCAGTGATCCAGAGAATTGGGATCGGAAATTGCATAGTAAATCTCT
AAACTTTTTAAACATTCAAATACTCCCTCACGTGTTGCTAAAGGAGGAGTCGACCACACCAAAATGAGTATACATGGTGC
TAGTGGGGAACATGTGTGATTGAGAGACAGACAAAGGTCAAGTGACAGATCAGGAGATTCAGCTCATGAAAGAACCTCTT
GAATTAGAAATGTTACTTCTCCAACATGACAGCAGCATGTTGAACAAGAAAAAGATCATAGTTCCTCTCACCCAAGCACT
CCTCGTCCTCAAAAAGCTAATGGAATGGTTCCATTAGCAGTGCTGGAAACAGCAGCAGAAACAGTAGTCAGTCAAGTTCA
GATGGTAGTTGTAAGACATCTGGGGAGATGGTGTTTGTATATGAAAATGCAAAGAAAGGTCCTCCGAATTTAAGAATGTC
TGAACGAATGGCATGATAGTGAATAACACTAGATTTGTTGCAGACCCATTCATTTTTACTGCACAGCCAAATACAGTGTT
GGACAGGATGTTTGGATTTGGCTGAGAACATAACTATACACGTCCCAATGAGAAGGGAGAATATGAGGTGGCAGAGGGAA
TTGGTTCCATTGTGTTTCGAGTTATTCTGGATTACCATAAAACGGGAATAATTCACTGTCCTGATAGGATATCAATTCCT
GAACTGAGAGAAGCATGTGATTATCCTTGTTTCTCTTTTAAATACGGTACTATTAAATGTAGAGATCTCAGTGCCCTAAT
GCATGAGTTATTGAATGATGCTGCTCGTAGACAATTTAAATTTTATCTAAAAGAAATGATCCTTCTTCTCATGGTAGCTA
GTGCCCAGAGTGGGGAACGAGAATGCCATACAGTGGCGCTTATAGATGAGTATATTGTTGATTGGGATATGAGTATCCAC
CACAAATGGGAGAATATTCAAGGATTATTTATAGCAAAAAATTAATAGATTTTTCAAGTACGTTGAAAACAGA

Alignment

ORF - retro_tsyr_367 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.63 %
• Parental protein coverage: 74.58 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MAGRLHLYDSNSSDPENWDRKLHSRP-RKLYKHSSTPSRVAKGEVDHTKMSLHGASGGHERSRDRRRSSD
          MA...H.YDS.SSDPENWDRKLHS....KL.KHS.TPSRVAKG.VDHTKMS.HGASG.H...RDR.....
Retrocopy MAEWPHPYDSISSDPENWDRKLHSKS<SKLFKHSNTPSRVAKGGVDHTKMSIHGASGEHV*LRDRQ----

Parental  RSRDSSHERTESQLTPCIRNVTSPTRQHHVEREKDHSSSRPSSPRPQKASP-NGSISSAGNSSRNSSQSS
          RS.D.S........T..IRNVTSPT.Q.HVE.EKDHSSS.PS.PRPQKA...NGSISSAGNSSRNSSQSS
Retrocopy RSSDRSGDSAHER-TS*IRNVTSPT*QQHVEQEKDHSSSHPSTPRPQKANG<NGSISSAGNSSRNSSQSS

Parental  SDGSCKTSGEMVFVYENAKEGARNVRTSERVT-LIVDNTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTR
          SDGSCKTSGEMVFVYENAK.G..N.R.SER....IV.NTRFV.DP.IFTAQPNT.L.RMFG.G.EHN.TR
Retrocopy SDGSCKTSGEMVFVYENAKKGPPNLRMSERMA<MIVNNTRFVADPFIFTAQPNTVLDRMFGFG*EHNYTR

Parental  PNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGISIPELREACDYLCISFEYSTIKCRDLSALMHELS
          PNEKGEYEVAEGIGS.VFR.ILDY.KTGII.CPD.ISIPELREACDY.C.SF.Y.TIKCRDLSALMHEL.
Retrocopy PNEKGEYEVAEGIGSIVFRVILDYHKTGIIHCPDRISIPELREACDYPCFSFKYGTIKCRDLSALMHELL

Parental  NDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDWD-EEYPPQMGEEYSQIIYSTKLY-RF
          ND.ARRQF.FYL.EMIL.LMVASAQSGERECH.V.L.D...VDWD..EYPPQMG.EYS.IIYS.KL..RF
Retrocopy NDAARRQFKFYLKEMILLLMVASAQSGERECHTVALIDEYIVDWD<YEYPPQMG-EYSRIIYSKKLI<RF

Parental  FKYIENR
          FKY.ENR
Retrocopy FKYVENR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_367 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000024984	1 retrocopy	retro_cpor_137,
Monodelphis domestica	ENSMODG00000008728	1 retrocopy	retro_mdom_1020,
Mus musculus	ENSMUSG00000038187	1 retrocopy	retro_mmus_3560,
Nomascus leucogenys	ENSNLEG00000017691	1 retrocopy	retro_nleu_232,
Otolemur garnettii	ENSOGAG00000000739	1 retrocopy	retro_ogar_3201,
Pan troglodytes	ENSPTRG00000003377	1 retrocopy	retro_ptro_753,
Rattus norvegicus	ENSRNOG00000014341	2 retrocopies	retro_rnor_2220, retro_rnor_2872,
Sorex araneus	ENSSARG00000000266	1 retrocopy	retro_sara_405,
Sus scrofa	ENSSSCG00000013395	2 retrocopies	retro_sscr_639, retro_sscr_640,
Tarsius syrichta	ENSTSYG00000000445	2 retrocopies	retro_tsyr_196, retro_tsyr_367 ,
Tarsius syrichta	ENSTSYG00000012406	1 retrocopy	retro_tsyr_2108,
Tursiops truncatus	ENSTTRG00000013943	1 retrocopy	retro_ttru_897,