Parental gene:

ENSCPOG00000024533

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_25:11687238..11695546(+)


>ENSCPOG00000024533
ATGTCCCGTTACCTGCGCCCCCCTAACACGTCTCTGTTCGTCAGGAATGTGGCCGACGACACGCGGTCTGAAGATTTACG
GCGTGAATTTGGCCGCTATGGTCCTATAGTTGATGTCTATGTTCCACTTGATTTCTACACTCGACGTCCAAGAGGATTTG
CTTATGTTCAATACACATTTGAGGATGTTCGTGACGCTGAAGATGCTTTACATAATTTGGACAGAAAATGGATTTGTGGA
CGTCAGATCGAAATACAATTTGCACAAGGGGATCGGAAGACACCAAATCAAATGAAAGCCAAGGAAGGAAGAAACGTGTA
CAGTTCTTCACGTTATGATGATTATGACAGATACAGACGGTCTAGGAGCCGGAGTTATGAAAGGAGGAGGTCAAGAAGTC
GGTCGTTTGATTACAACTATAGAAGATCTTATAGTCCTAGAAACAGTAGACCAACTGGAAGACCACGACGTAGCAGAAGC
CATTCCGACAATGATAGATTCAAACACCGAAATCGATCTTTTTCAAGATCTAAATCCAATTCAAGATCACGGTCCAAGTC
CCAGCCCAAGAAAGAAATGAAGGCTAAATCACGTTCTAGGTCTGCATCTCACACCAAAACTAGAGGCACCTCTAAAACAG
ATTCCAAAACACATTATAAGTCTGGCTCAAGATATGAAAAGGAATCGAGGAAAAAAGAACCACCTAGATCC

Library Parental gene expression (RPM)
SRP017611_liver 15 .63 RPM
SRP017611_kidney 22 .82 RPM
SRP017611_brain 16 .62 RPM
SRP040447_lung 24 .39 RPM
SRP040447_skeletal_muscle 11 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009869 possible_ortholog 2 retrogenes
retro_amel_1810, retro_amel_355,
Bos taurus ENSBTAG00000008072 possible_ortholog 1 retrogene
retro_btau_759,
Choloepus hoffmanni ENSCHOG00000004836 possible_ortholog 1 retrogene
retro_chof_7,
Callithrix jacchus ENSCJAG00000020883 possible_ortholog 9 retrogenes
retro_cjac_1126, retro_cjac_1170, retro_cjac_2176, retro_cjac_2595, retro_cjac_2638, retro_cjac_3852, retro_cjac_628, retro_cjac_705, retro_cjac_864,
Dasypus novemcinctus ENSDNOG00000008699 possible_ortholog 3 retrogenes
retro_dnov_1327, retro_dnov_1809, retro_dnov_2244,
Dipodomys ordii ENSDORG00000009136 possible_ortholog 1 retrogene
retro_dord_667,
Erinaceus europaeus ENSEEUG00000014286 ortholog_one2many 1 retrogene
retro_eeur_522,
Homo sapiens ENSG00000188529 possible_ortholog 5 retrogenes
retro_hsap_1343, retro_hsap_1940, retro_hsap_2445, retro_hsap_3054, retro_hsap_4295,
Gorilla gorilla ENSGGOG00000000392 possible_ortholog 4 retrogenes
retro_ggor_1044, retro_ggor_1411, retro_ggor_1522, retro_ggor_2870,
Loxodonta africana ENSLAFG00000026905 ortholog_one2one 1 retrogene
retro_lafr_148,
Myotis lucifugus ENSMLUG00000028520 possible_ortholog 1 retrogene
retro_mluc_89,
Mustela putorius furo ENSMPUG00000015845 possible_ortholog 1 retrogene
retro_mputfur_353,
Mus musculus ENSMUSG00000028676 ortholog_one2one 5 retrogenes
retro_mmus_1081, retro_mmus_1311, retro_mmus_1814, retro_mmus_3480, retro_mmus_982,
Nomascus leucogenys ENSNLEG00000013180 possible_ortholog 3 retrogenes
retro_nleu_1647, retro_nleu_1825, retro_nleu_202,
Oryctolagus cuniculus ENSOCUG00000029326 possible_ortholog 1 retrogene
retro_ocun_717,
Otolemur garnettii ENSOGAG00000015374 possible_ortholog 2 retrogenes
retro_ogar_2650, retro_ogar_2987,
Ochotona princeps ENSOPRG00000018613 ortholog_one2one 3 retrogenes
retro_opri_1067, retro_opri_295, retro_opri_916,
Pongo abelii ENSPPYG00000001726 possible_ortholog 4 retrogenes
retro_pabe_1115, retro_pabe_1601, retro_pabe_1796, retro_pabe_2529,
Pan troglodytes ENSPTRG00000024234 ortholog_one2one 4 retrogenes
retro_ptro_1295, retro_ptro_1413, retro_ptro_1986, retro_ptro_918,
Rattus norvegicus ENSRNOG00000007992 possible_ortholog 3 retrogenes
retro_rnor_1657, retro_rnor_2800, retro_rnor_2829,
Sus scrofa ENSSSCG00000021615 possible_ortholog 2 retrogenes
retro_sscr_528, retro_sscr_554,
Ictidomys tridecemlineatus ENSSTOG00000000956 possible_ortholog 1 retrogene
retro_itri_1333,
Tupaia belangeri ENSTBEG00000017716 possible_ortholog 1 retrogene
retro_tbel_4154,
Tursiops truncatus ENSTTRG00000016150 possible_ortholog 2 retrogenes
retro_ttru_1098, retro_ttru_695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1098 61.87 58.65
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Download FASTA sequences of all ENSCPOG00000024533 retrocopies