RetrogeneDB - Parental gene ENSCPOG00000015348 details

							
>ENSCPOG00000015348
ATGGTGCAGCAGATTGAAAGCAAAGAGGCCTTTCAAGAAGCCTTGAATGATGCAGGAGATAAACTTGTAGTAGTTGATTT

CTCAGCCACATGGTGTGGGCCTTGCAAAATGATCAAGCCTTTCTTTCATTCCCTGTCTGAAAAATATTCCAACGTGGTGT

TCCTTGAAGTAGATGTGGATGACTGTCAGGATGTCGCTGCAGAATGTGAAGTCAAATGTATGCCAACCTTCCAGTTTTTT

AAAAAGGGTAAAAAGGTGAGTGAGTTTTCTGGCGCTAACAAGGAAAAGCTTGAAGCCACCATTAATGAGTTAGTCTAA

Library	Parental gene expression (RPM)
SRP017611_liver	128 .40 RPM
SRP017611_kidney	72 .97 RPM
SRP017611_brain	23 .87 RPM
SRP040447_lung	65 .04 RPM
SRP040447_skeletal_muscle	24 .32 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000013018	ortholog_one2many	3 retrogenes	retro_acar_112, retro_acar_121, retro_acar_122,
Ailuropoda melanoleuca	ENSAMEG00000018017	possible_ortholog	3 retrogenes	retro_amel_1559, retro_amel_211, retro_amel_217,
Bos taurus	ENSBTAG00000002953	possible_ortholog	2 retrogenes	retro_btau_1267, retro_btau_418,
Choloepus hoffmanni	ENSCHOG00000011506	ortholog_one2many	10 retrogenes	retro_chof_1111, retro_chof_127, retro_chof_1557, retro_chof_1680, retro_chof_1696, retro_chof_240, retro_chof_2424, retro_chof_317, retro_chof_617, retro_chof_82,
Callithrix jacchus	ENSCJAG00000017321	ortholog_many2many	5 retrogenes	retro_cjac_1407, retro_cjac_2536, retro_cjac_2733, retro_cjac_3010, retro_cjac_69,
Dasypus novemcinctus	ENSDNOG00000019205	ortholog_one2many	20 retrogenes	retro_dnov_100, retro_dnov_1047, retro_dnov_1122, retro_dnov_1222, retro_dnov_1353, retro_dnov_1403, retro_dnov_1404, retro_dnov_1628, retro_dnov_1634, retro_dnov_1646, retro_dnov_1949, retro_dnov_1996, retro_dnov_2069, retro_dnov_2197, retro_dnov_2239, retro_dnov_290, retro_dnov_466, retro_dnov_593, retro_dnov_843, retro_dnov_852,
Equus caballus	ENSECAG00000013324	possible_ortholog	1 retrogene	retro_ecab_51,
Echinops telfairi	ENSETEG00000003065	ortholog_one2many	13 retrogenes	retro_etel_1173, retro_etel_1256, retro_etel_1672, retro_etel_1725, retro_etel_1807, retro_etel_1831, retro_etel_1932, retro_etel_1956, retro_etel_320, retro_etel_389, retro_etel_737, retro_etel_903, retro_etel_926,
Felis catus	ENSFCAG00000004790	possible_ortholog	4 retrogenes	retro_fcat_1096, retro_fcat_1105, retro_fcat_2025, retro_fcat_877,
Homo sapiens	ENSG00000136810	ortholog_one2many	7 retrogenes	retro_hsap_1713, retro_hsap_206, retro_hsap_2330, retro_hsap_3052, retro_hsap_3614, retro_hsap_405, retro_hsap_736,
Gorilla gorilla	ENSGGOG00000006925	ortholog_many2many	6 retrogenes	retro_ggor_1283, retro_ggor_1769, retro_ggor_2440, retro_ggor_35, retro_ggor_401, retro_ggor_620,
Loxodonta africana	ENSLAFG00000012856	ortholog_one2many	2 retrogenes	retro_lafr_372, retro_lafr_93,
Macropus eugenii	ENSMEUG00000003515	ortholog_one2many	8 retrogenes	retro_meug_1198, retro_meug_1204, retro_meug_1603, retro_meug_192, retro_meug_2170, retro_meug_2175, retro_meug_539, retro_meug_840,
Microcebus murinus	ENSMICG00000002128	ortholog_one2many	2 retrogenes	retro_mmur_118, retro_mmur_717,
Myotis lucifugus	ENSMLUG00000009065	possible_ortholog	3 retrogenes	retro_mluc_1268, retro_mluc_1940, retro_mluc_776,
Macaca mulatta	ENSMMUG00000010322	ortholog_many2many	1 retrogene	retro_mmul_167,
Mustela putorius furo	ENSMPUG00000007426	possible_ortholog	3 retrogenes	retro_mputfur_1230, retro_mputfur_693, retro_mputfur_840,
Mus musculus	ENSMUSG00000028367	ortholog_one2many	2 retrogenes	retro_mmus_3063, retro_mmus_432,
Otolemur garnettii	ENSOGAG00000009165	ortholog_one2many	6 retrogenes	retro_ogar_1573, retro_ogar_2763, retro_ogar_3141, retro_ogar_3205, retro_ogar_727, retro_ogar_851,
Ochotona princeps	ENSOPRG00000013805	ortholog_one2many	11 retrogenes	retro_opri_1132, retro_opri_1172, retro_opri_220, retro_opri_309, retro_opri_468, retro_opri_643, retro_opri_681, retro_opri_738, retro_opri_81, retro_opri_887, retro_opri_89,
Procavia capensis	ENSPCAG00000014011	ortholog_one2many	1 retrogene	retro_pcap_311,
Pongo abelii	ENSPPYG00000019491	ortholog_many2many	2 retrogenes	retro_pabe_1428, retro_pabe_2965,
Pan troglodytes	ENSPTRG00000021245	ortholog_one2many	7 retrogenes	retro_ptro_1158, retro_ptro_1703, retro_ptro_1988, retro_ptro_2444, retro_ptro_309, retro_ptro_339, retro_ptro_524,
Pteropus vampyrus	ENSPVAG00000007265	possible_ortholog	1 retrogene	retro_pvam_433,
Rattus norvegicus	ENSRNOG00000012081	ortholog_one2many	1 retrogene	retro_rnor_616,
Sorex araneus	ENSSARG00000007465	possible_ortholog	2 retrogenes	retro_sara_373, retro_sara_525,
Sarcophilus harrisii	ENSSHAG00000006739	ortholog_one2many	1 retrogene	retro_shar_329,
Sus scrofa	ENSSSCG00000005453	possible_ortholog	1 retrogene	retro_sscr_786,
Ictidomys tridecemlineatus	ENSSTOG00000020668	possible_ortholog	4 retrogenes	retro_itri_6, retro_itri_714, retro_itri_823, retro_itri_884,
Tupaia belangeri	ENSTBEG00000011193	ortholog_many2many	2 retrogenes	retro_tbel_1293, retro_tbel_3405,
Tursiops truncatus	ENSTTRG00000000119	possible_ortholog	1 retrogene	retro_ttru_1378,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_49	75.25	96.19	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_54	99.05	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_55	93.33	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_74	59.62	99.05	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_1048	56.25	60.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000015348 retrocopies

Parental gene:	ENSCPOG00000015348
Aliases:	None
Description:	Thioredoxin [Source:UniProtKB/TrEMBL;Acc:H0VT53]
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_93:2518892..2528480(-)

Parental gene:

ENSCPOG00000015348