Parental gene:

NDUFAB1, ENSCPOG00000012038

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:40014145..40023545(-)


>ENSCPOG00000012038
ATGGCGGCTCGTGTCCTTTCAGTCTGTGTCCGCCGCCTGCCCTCGGCCTTGGTGCCACCGTCCCGGCTCCCTACGCTGGC
CCTGGCCCGTACACTCAGCACCGCTTTGTGTGCCGCGCGAACCCAGACGAGGCTCGGGGCGGCGCAGCTGGCTTTGGCTT
TCGCACAGGTTCCAGGGAGGATTCCACAGTTTTGCCGCCAGTATAGTGATGCACCTCCTTTGACATTAGAAGGAATCAAG
GATCGGGTTCTGTATGTCTTGAAACTTTATGACAAGATTGACCCAGAAAAGCTCTCAGTAAATTCGCATTTTATGAAAGA
CCTGGGCTTAGACAGTTTGGACCAAGTGGAAATTATCATGGCCATGGAGGATGAATTTGGGTTTGAAATTCCTGATATAG
ATGCAGAAAAGTTAATGTGCCCACAAGAAATTGTGGATTACATTGCAGATAAGAAGGATGTATATGAATAA

Library Parental gene expression (RPM)
SRP017611_liver 55 .93 RPM
SRP017611_kidney 83 .96 RPM
SRP017611_brain 31 .46 RPM
SRP040447_lung 19 .70 RPM
SRP040447_skeletal_muscle 115 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014304 ortholog_one2many 1 retrogene
retro_amel_1692,
Canis familiaris ENSCAFG00000017667 ortholog_one2many 3 retrogenes
retro_cfam_1738, retro_cfam_1821, retro_cfam_450,
Choloepus hoffmanni ENSCHOG00000003558 ortholog_one2one 2 retrogenes
retro_chof_1517, retro_chof_2498,
Callithrix jacchus ENSCJAG00000020616 ortholog_one2many 2 retrogenes
retro_cjac_2635, retro_cjac_3099,
Dasypus novemcinctus ENSDNOG00000017122 ortholog_one2one 5 retrogenes
retro_dnov_1450, retro_dnov_1733, retro_dnov_2024, retro_dnov_89, retro_dnov_911,
Felis catus ENSFCAG00000013241 ortholog_one2many 3 retrogenes
retro_fcat_1104, retro_fcat_1181, retro_fcat_2012,
Homo sapiens ENSG00000004779 ortholog_one2one 1 retrogene
retro_hsap_3484,
Gorilla gorilla ENSGGOG00000006320 ortholog_one2one 1 retrogene
retro_ggor_2349,
Loxodonta africana ENSLAFG00000001032 ortholog_one2one 1 retrogene
retro_lafr_330,
Macropus eugenii ENSMEUG00000012681 ortholog_one2one 3 retrogenes
retro_meug_1780, retro_meug_303, retro_meug_830,
Microcebus murinus ENSMICG00000007778 ortholog_one2one 2 retrogenes
retro_mmur_1193, retro_mmur_120,
Macaca mulatta ENSMMUG00000020522 ortholog_one2many 1 retrogene
retro_mmul_101,
Monodelphis domestica ENSMODG00000016352 ortholog_one2one 1 retrogene
retro_mdom_389,
Mustela putorius furo ENSMPUG00000012142 ortholog_one2one 2 retrogenes
retro_mputfur_1135, retro_mputfur_466,
Mus musculus ENSMUSG00000030869 ortholog_one2one 6 retrogenes
retro_mmus_1724, retro_mmus_2073, retro_mmus_2188, retro_mmus_2947, retro_mmus_3094, retro_mmus_3332,
Oryctolagus cuniculus ENSOCUG00000008457 ortholog_one2one 1 retrogene
retro_ocun_1712,
Otolemur garnettii ENSOGAG00000005562 ortholog_one2many 2 retrogenes
retro_ogar_2916, retro_ogar_325,
Pongo abelii ENSPPYG00000007192 ortholog_one2one 1 retrogene
retro_pabe_2879,
Pan troglodytes ENSPTRG00000007889 ortholog_one2one 1 retrogene
retro_ptro_2358,
Rattus norvegicus ENSRNOG00000018129 ortholog_one2many 2 retrogenes
retro_rnor_1353, retro_rnor_2058,
Sus scrofa ENSSSCG00000010795 ortholog_one2one 1 retrogene
retro_sscr_1017,
Ictidomys tridecemlineatus ENSSTOG00000024657 ortholog_one2one 2 retrogenes
retro_itri_281, retro_itri_916,
Tursiops truncatus ENSTTRG00000005258 ortholog_one2one 2 retrogenes
retro_ttru_1229, retro_ttru_989,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_728 73.83 94.23
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2. retro_cpor_767 72.12 64.10
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Download FASTA sequences of all ENSCPOG00000012038 retrocopies