Parental gene:

C11ORF58, ENSCPOG00000009679

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_67:7029080..7045838(+)


>ENSCPOG00000009679
ATGAGTGCTGCCAGGGAGTCTCACCCGCACGGGGTGAAGCGTTCAGCTTCCCCAGACGACGATCTTGGATCTAGCAATTG
GGAGGCAGCAGACTTGGGCAGTGAAGAGAGAAAACAAAAGTTCCTCAGACTTATGGGTGCAGGAAAGAAGGAACACACTG
GTCGTCTTGTTATAGGAGATCACAAATCAACATCACATTTCCGAACAGGGGAAGAAGACAAGAAAATTAATGAAGAACTG
GAGTCTCAATATCAGCAAAGTATGGACAGTAAATTATCAGGAAGATACCGACGACATTGTGGACTTGGCTTCAGTGAGGT
AGAAGATCATGATGGAGAAGGTGATGTGGCTGCAGATGATGATGATGATGATGATTCACCTGATCCTGAAAGTCCAGATG
ATTCTGAAAGTGATTCAGAGTCAGAAAAGGAAGAATCTGCTGATGAACTCCAAGCTACTGAGCATCCTGATGAAGTGGAA
GATCCCAAAAACAAAAAAGATGCAAAAGGCAACTATAAAATGATGTTTGTTAAATCCAGTGGTTCA

Library Parental gene expression (RPM)
SRP017611_liver 30 .21 RPM
SRP017611_kidney 34 .55 RPM
SRP017611_brain 28 .30 RPM
SRP040447_lung 34 .93 RPM
SRP040447_skeletal_muscle 30 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030220 ortholog_one2many 2 retrogenes
retro_cfam_160, retro_cfam_717,
Callithrix jacchus ENSCJAG00000009626 ortholog_one2one 1 retrogene
retro_cjac_3098,
Equus caballus ENSECAG00000011778 ortholog_one2one 1 retrogene
retro_ecab_269,
Felis catus ENSFCAG00000027747 ortholog_one2one 1 retrogene
retro_fcat_2016,
Homo sapiens ENSG00000110696 ortholog_one2one 2 retrogenes
retro_hsap_1408, retro_hsap_3898,
Macropus eugenii ENSMEUG00000011795 ortholog_one2one 1 retrogene
retro_meug_1432,
Myotis lucifugus ENSMLUG00000001589 ortholog_one2one 1 retrogene
retro_mluc_2604,
Monodelphis domestica ENSMODG00000007147 ortholog_one2one 2 retrogenes
retro_mdom_1249, retro_mdom_672,
Mus musculus ENSMUSG00000030663 ortholog_one2one 2 retrogenes
retro_mmus_2190, retro_mmus_2616,
Nomascus leucogenys ENSNLEG00000017719 ortholog_one2one 1 retrogene
retro_nleu_1425,
Otolemur garnettii ENSOGAG00000025335 ortholog_one2one 2 retrogenes
retro_ogar_1613, retro_ogar_2569,
Ochotona princeps ENSOPRG00000000154 ortholog_one2one 1 retrogene
retro_opri_761,
Pongo abelii ENSPPYG00000003458 ortholog_one2one 2 retrogenes
retro_pabe_1166, retro_pabe_3178,
Rattus norvegicus ENSRNOG00000020436 ortholog_one2one 1 retrogene
retro_rnor_622,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_772 50.32 84.07
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2. retro_cpor_1331 64.91 62.09
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Download FASTA sequences of all ENSCPOG00000009679 retrocopies