Parental gene: | PABPC4, ENSCPOG00000009552 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_143:1575062..1590511(-) |
>ENSCPOG00000009552
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCCTCTACGTGGGCGATCTGCACTCGGACGTCACCGAGGCCATGCT
CTATGAAAAGTTCAGTCCAGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGAGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCAGCTGACGCTGAGCGGGCCTTGGACACCATGAACTTTGATGTGATTAAAGGAAAG
CCAATCCGTATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACCTTCTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAATGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTAGGCAGATTCAAGTCTCGCAAAGAGCGGGAGGCTGAGCTTGGAGCCAAAGC
CAAAGAATTCACCAATGTTTATATCAAGAACTTTGGAGAAGAGGTGGACGATGAGAATCTGAAAGAGCTGTTTAGCCAGT
TTGGTAAGACCCTCAGTGTCAAGGTGATGAGAGATCCCAGTGGAAAATCCAAAGGCTTTGGCTTTGTGAGTTATGAAAAA
CACGAGGATGCCAATAAGGCCGTGGAAGAGATGAATGGAAAAGAAATCAATGGGAAAATCATATTTGTAGGCCGTGCACA
GAAGAAAGTAGAGCGGCAGGCTGAGTTAAAACGGAAATTTGAGCAGCTGAAACAGGAGAGAATTAGTCGATACCAGGGAG
TAAATCTCTACATTAAGAACTTGGACGACACCATTGATGATGAGAAATTAAGAAAAGAATTTTCTCCTTTTGGATCAATC
ACCAGTGCTAAGGTAATGCTGGAGGATGGAAGAAGCAAAGGATTTGGTTTCGTCTGTTTCTCATCTCCTGAGGAGGCAAC
CAAAGCAGTCACTGAAATGAATGGGCGCATTGTGGGTTCCAAGCCATTGTATGTTGCCCTGGCCCAAAGGAAGGAGGAGA
GAAAGGCTCACCTAACCAACCAGTACATGCAGCGAGTGGCTGGAATGAGAGCGCTCCCGGCCAATGCCATCTTAAACCAG
TTTCAGCCTGCAGCTGGTGGCTACTTTGTGCCAGCGGTTCCACAGGCTCAGGGACGACCGCCGTATTACACACCTAACCA
ATTGGCACAGATGAGGCCTAATCCACGCTGGCAGCAGGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCGAGCGCTATAC
GCCAATCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
ACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCAGTCCCGAACCTCGCGCCTCGGGCTGCAGTTGCTGCTGCCGCTCCTC
GGGCTGTGGCCCCATACAAGTATGCCTCCAGCGTCCGCAGCCCGCACCCTGCCATACAGCCCCTGCAGGCACCCCAGCCT
GCTGTCCACGTGCAGGGGCAGGAGCCCCTGACTGCCTCCATGCTGGCTGCCGCGCCCCCCCAGGAGCAGAAGCAGATGCT
GGGAGAACGATTGTTCCCACTCATCCAAACAATGCATTCGAACCTGGCTGGCAAAATCACGGGCATGCTGCTAGAGATCG
ACAACTCAGAACTGCTGCACATGCTCGAGTCCCCTGAGTCTCTGCGCTCAAAGGTGGATGAAGCTGTGGCAGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCCGTTGCTGCTGCTACCTCTTAG
ATGAACGCTGCAGCCAGCAGCTACCCCATGGCCTCCCTCTACGTGGGCGATCTGCACTCGGACGTCACCGAGGCCATGCT
CTATGAAAAGTTCAGTCCAGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGAGATATGATCACCCGCCGCTCCCTGGGTT
ATGCCTACGTCAACTTCCAGCAGCCAGCTGACGCTGAGCGGGCCTTGGACACCATGAACTTTGATGTGATTAAAGGAAAG
CCAATCCGTATCATGTGGTCTCAGAGGGATCCCTCTTTGAGAAAATCTGGTGTGGGAAACGTCTTCATCAAGAACCTGGA
CAAATCTATAGATAACAAGGCACTTTATGATACCTTCTCTGCTTTTGGAAACATTCTGTCCTGCAAGGTGGTGTGTGATG
AGAATGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCGACAAGGCCATCGAGAAGATGAATGGC
ATGCTCCTCAATGACCGCAAAGTGTTTGTAGGCAGATTCAAGTCTCGCAAAGAGCGGGAGGCTGAGCTTGGAGCCAAAGC
CAAAGAATTCACCAATGTTTATATCAAGAACTTTGGAGAAGAGGTGGACGATGAGAATCTGAAAGAGCTGTTTAGCCAGT
TTGGTAAGACCCTCAGTGTCAAGGTGATGAGAGATCCCAGTGGAAAATCCAAAGGCTTTGGCTTTGTGAGTTATGAAAAA
CACGAGGATGCCAATAAGGCCGTGGAAGAGATGAATGGAAAAGAAATCAATGGGAAAATCATATTTGTAGGCCGTGCACA
GAAGAAAGTAGAGCGGCAGGCTGAGTTAAAACGGAAATTTGAGCAGCTGAAACAGGAGAGAATTAGTCGATACCAGGGAG
TAAATCTCTACATTAAGAACTTGGACGACACCATTGATGATGAGAAATTAAGAAAAGAATTTTCTCCTTTTGGATCAATC
ACCAGTGCTAAGGTAATGCTGGAGGATGGAAGAAGCAAAGGATTTGGTTTCGTCTGTTTCTCATCTCCTGAGGAGGCAAC
CAAAGCAGTCACTGAAATGAATGGGCGCATTGTGGGTTCCAAGCCATTGTATGTTGCCCTGGCCCAAAGGAAGGAGGAGA
GAAAGGCTCACCTAACCAACCAGTACATGCAGCGAGTGGCTGGAATGAGAGCGCTCCCGGCCAATGCCATCTTAAACCAG
TTTCAGCCTGCAGCTGGTGGCTACTTTGTGCCAGCGGTTCCACAGGCTCAGGGACGACCGCCGTATTACACACCTAACCA
ATTGGCACAGATGAGGCCTAATCCACGCTGGCAGCAGGGTGGGAGACCTCAAGGCTTCCAAGGAATGCCGAGCGCTATAC
GCCAATCTGGGCCTCGTCCAACTCTTCGCCATCTGGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTCCCTACTACC
ACTCAGAGAGTCGGGTCTGAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGAC
TGACAGCTGCCAGTCTGGAGGTGTTCCCACAGCAGTCCCGAACCTCGCGCCTCGGGCTGCAGTTGCTGCTGCCGCTCCTC
GGGCTGTGGCCCCATACAAGTATGCCTCCAGCGTCCGCAGCCCGCACCCTGCCATACAGCCCCTGCAGGCACCCCAGCCT
GCTGTCCACGTGCAGGGGCAGGAGCCCCTGACTGCCTCCATGCTGGCTGCCGCGCCCCCCCAGGAGCAGAAGCAGATGCT
GGGAGAACGATTGTTCCCACTCATCCAAACAATGCATTCGAACCTGGCTGGCAAAATCACGGGCATGCTGCTAGAGATCG
ACAACTCAGAACTGCTGCACATGCTCGAGTCCCCTGAGTCTCTGCGCTCAAAGGTGGATGAAGCTGTGGCAGTTCTACAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCGCCGTTGCTGCTGCTACCTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 33 .04 RPM |
| SRP017611_kidney | 66 .48 RPM |
| SRP017611_brain | 35 .03 RPM |
| SRP040447_lung | 77 .38 RPM |
| SRP040447_skeletal_muscle | 440 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000011535 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002512 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000002044 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000012917 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000015254 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000090621 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004002 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000016633 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007497 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017657 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014414 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000011257 | ortholog_one2many | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011928 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000000562 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004067 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011984 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001506 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000573 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015642 | ortholog_one2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000018139 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_77 | 65.29 | 54.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1330 | 68.11 | 55.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000009552 retrocopies