Parental gene:

ENSCPOG00000007172

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:54612053..54617799(+)


>ENSCPOG00000007172
ATGGTTTACATCTCGAATGGACAAGTGTTGGACAATCGCAGTCAGTCTCCATGGAGACTGTCATTAATAACAGATTTCTT
CTGGGGAATAGCCGAGTTTGTGGTTTTGTTTTTCAAAACTCTGCTTCAACAAGATGTGAAAAAAGGAAGAGGCTACAGAA
ACTCATCTGATTCCAGATATGATGATGGAAGAGGGCCACCAGGAAACCCTCCCCGAAGAATGGGGCGAATCAATCATCTT
CAAGGTCCCAGTCCTCCTCCAATGGCTGGTGGA

Library Parental gene expression (RPM)
SRP017611_liver 5 .18 RPM
SRP017611_kidney 7 .64 RPM
SRP017611_brain 6 .84 RPM
SRP040447_lung 13 .06 RPM
SRP040447_skeletal_muscle 9 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007612 ortholog_one2one 8 retrogenes
retro_cjac_1748, retro_cjac_2086, retro_cjac_2144, retro_cjac_2374, retro_cjac_2684, retro_cjac_2825, retro_cjac_3897, retro_cjac_726,
Homo sapiens ENSG00000113811 ortholog_one2one 3 retrogenes
retro_hsap_2027, retro_hsap_2055, retro_hsap_3513,
Gorilla gorilla ENSGGOG00000000681 ortholog_one2one 2 retrogenes
retro_ggor_1481, retro_ggor_2375,
Microcebus murinus ENSMICG00000017513 ortholog_one2one 2 retrogenes
retro_mmur_1054, retro_mmur_202,
Myotis lucifugus ENSMLUG00000012622 ortholog_one2many 3 retrogenes
retro_mluc_122, retro_mluc_1930, retro_mluc_2276,
Macaca mulatta ENSMMUG00000019272 ortholog_one2one 4 retrogenes
retro_mmul_1308, retro_mmul_1388, retro_mmul_1861, retro_mmul_625,
Mus musculus ENSMUSG00000042682 ortholog_one2one 9 retrogenes
retro_mmus_1015, retro_mmus_1017, retro_mmus_1019, retro_mmus_1106, retro_mmus_1855, retro_mmus_2704, retro_mmus_2705, retro_mmus_3495, retro_mmus_772,
Nomascus leucogenys ENSNLEG00000026533 ortholog_one2many 2 retrogenes
retro_nleu_2443, retro_nleu_483,
Ochotona princeps ENSOPRG00000002266 ortholog_one2one 6 retrogenes
retro_opri_167, retro_opri_389, retro_opri_571, retro_opri_679, retro_opri_745, retro_opri_975,
Pongo abelii ENSPPYG00000025894 ortholog_one2many 3 retrogenes
retro_pabe_107, retro_pabe_1658, retro_pabe_2904,
Pan troglodytes ENSPTRG00000015030 ortholog_one2one 3 retrogenes
retro_ptro_1348, retro_ptro_1370, retro_ptro_2386,
Pteropus vampyrus ENSPVAG00000016291 ortholog_one2one 1 retrogene
retro_pvam_891,
Rattus norvegicus ENSRNOG00000014624 ortholog_one2many 4 retrogenes
retro_rnor_1064, retro_rnor_1065, retro_rnor_2580, retro_rnor_2947,
Sus scrofa ENSSSCG00000011459 ortholog_one2one 1 retrogene
retro_sscr_1037,
Ictidomys tridecemlineatus ENSSTOG00000000506 ortholog_one2one 2 retrogenes
retro_itri_218, retro_itri_509,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_255 61.84 82.42
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2. retro_cpor_320 81.32 98.90
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3. retro_cpor_467 76.67 96.70
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4. retro_cpor_562 84.27 97.80
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Download FASTA sequences of all ENSCPOG00000007172 retrocopies