Parental gene: | H3F3B, ENSCPOG00000004707 |
| Aliases: | None |
| Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:H0V3S0] |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_193:313916..314517(-) |
>ENSCPOG00000004707
ATGGCTCGAACCAAGCAGACTGCGCGTAAGTCCACTGGTGGGAAAGCCCCCCGAAAACAGCTGGCCACTAAAGCTGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAACCTCATCGCTACAGGCCTGGAACCGTGGCGCTTCGAGAGATTCGTC
GCTACCAGAAATCGACTGAGCTTCTCATTCGGAAGCTACCTTTTCAGAGATTGGTGAGAGAGATTGCCCAGGATTTCAAG
ACCGACTTGAGGTTTCAGAGTGCAGCTATTGGTGCTCTGCAGGAGGCTAGTGAAGCATACCTGGTGGGCTTATTTGAAGA
TACAAATCTGTGTGCCATTCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCCCGCCGGATACGGGGAG
AGAGAGCTTAA
ATGGCTCGAACCAAGCAGACTGCGCGTAAGTCCACTGGTGGGAAAGCCCCCCGAAAACAGCTGGCCACTAAAGCTGCCAG
GAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAACCTCATCGCTACAGGCCTGGAACCGTGGCGCTTCGAGAGATTCGTC
GCTACCAGAAATCGACTGAGCTTCTCATTCGGAAGCTACCTTTTCAGAGATTGGTGAGAGAGATTGCCCAGGATTTCAAG
ACCGACTTGAGGTTTCAGAGTGCAGCTATTGGTGCTCTGCAGGAGGCTAGTGAAGCATACCTGGTGGGCTTATTTGAAGA
TACAAATCTGTGTGCCATTCACGCCAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCCCGCCGGATACGGGGAG
AGAGAGCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 79 .74 RPM |
| SRP017611_kidney | 163 .52 RPM |
| SRP017611_brain | 67 .75 RPM |
| SRP040447_lung | 205 .10 RPM |
| SRP040447_skeletal_muscle | 127 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009765 | ortholog_one2one | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000009661 | ortholog_one2one | 10 retrogenes | |
| Loxodonta africana | ENSLAFG00000021624 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015447 | ortholog_one2one | 10 retrogenes | |
| Mus musculus | ENSMUSG00000060743 | ortholog_one2one | 19 retrogenes |
retro_mmus_1053, retro_mmus_1116, retro_mmus_1139, retro_mmus_1151, retro_mmus_1254, retro_mmus_2285, retro_mmus_2614, retro_mmus_2934, retro_mmus_3009, retro_mmus_3213, retro_mmus_3425, retro_mmus_395, retro_mmus_498, retro_mmus_808, retro_mmus_884, retro_mmus_885, retro_mmus_886, retro_mmus_959, retro_mmus_960,
|
| Oryctolagus cuniculus | ENSOCUG00000024644 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000008636 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000024226 | ortholog_one2one | 8 retrogenes | |
| Tupaia belangeri | ENSTBEG00000006177 | ortholog_one2one | 13 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_432 | 63.85 | 94.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_695 | 69.12 | 97.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_842 | 53.06 | 70.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_853 | 73.11 | 87.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cpor_1059 | 82.61 | 99.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cpor_1390 | 91.97 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cpor_1524 | 72.26 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000004707 retrocopies