Parental gene:

H3F3B, ENSAMEG00000009765

Aliases:None
Description:H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192703.1:935731..936361(-)


>ENSAMEG00000009765
ATGGCCCGAACCAAGCAGACTGCCCGTAAATCCACGGGTGGGAAAGCGCCCCGCAAACAGCTGGCCACTAAAGCCGCCCG
GAAAAGCGCCCCTTCTACCGGTGGGGTGAAAAAACCTCATCGCTACAGGCCCGGGACCGTAGCGCTTCGGGAGATCCGTC
GTTACCAGAAATCCACCGAGCTTCTGATCCGGAAGCTGCCTTTCCAGAGGTTGGTGAGGGAAATCGCCCAGGATTTCAAA
ACCGATCTGAGGTTTCAGAGCGCCGCCATTGGCGCGCTTCAGGAGGCCAGTGAAGCGTACCTGGTGGGTTTATTTGAAGA
TACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAG
AGAGAGCTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014588 within_species_paralog 7 retrogenes
retro_amel_1023, retro_amel_1026, retro_amel_144, retro_amel_570, retro_amel_687, retro_amel_711, retro_amel_903,
Choloepus hoffmanni ENSCHOG00000009661 ortholog_one2one 10 retrogenes
retro_chof_1580, retro_chof_1635, retro_chof_1911, retro_chof_2281, retro_chof_2294, retro_chof_2343, retro_chof_2546, retro_chof_454, retro_chof_517, retro_chof_530,
Cavia porcellus ENSCPOG00000004707 ortholog_one2one 7 retrogenes
retro_cpor_1059, retro_cpor_1390, retro_cpor_1524, retro_cpor_432, retro_cpor_695, retro_cpor_842, retro_cpor_853,
Loxodonta africana ENSLAFG00000021624 ortholog_one2one 4 retrogenes
retro_lafr_172, retro_lafr_410, retro_lafr_546, retro_lafr_832,
Myotis lucifugus ENSMLUG00000015447 ortholog_one2one 10 retrogenes
retro_mluc_146, retro_mluc_1571, retro_mluc_2286, retro_mluc_2344, retro_mluc_2364, retro_mluc_246, retro_mluc_2468, retro_mluc_2500, retro_mluc_392, retro_mluc_613,
Mus musculus ENSMUSG00000060743 ortholog_one2one 19 retrogenes
retro_mmus_1053, retro_mmus_1116, retro_mmus_1139, retro_mmus_1151, retro_mmus_1254, retro_mmus_2285, retro_mmus_2614, retro_mmus_2934, retro_mmus_3009, retro_mmus_3213, retro_mmus_3425, retro_mmus_395, retro_mmus_498, retro_mmus_808, retro_mmus_884, retro_mmus_885, retro_mmus_886, retro_mmus_959, retro_mmus_960,
Oryctolagus cuniculus ENSOCUG00000024644 possible_ortholog 2 retrogenes
retro_ocun_185, retro_ocun_217,
Pongo abelii ENSPPYG00000008636 possible_ortholog 1 retrogene
retro_pabe_2662,
Ictidomys tridecemlineatus ENSSTOG00000024226 ortholog_one2one 8 retrogenes
retro_itri_315, retro_itri_449, retro_itri_465, retro_itri_505, retro_itri_649, retro_itri_695, retro_itri_764, retro_itri_771,
Tupaia belangeri ENSTBEG00000006177 ortholog_one2one 13 retrogenes
retro_tbel_110, retro_tbel_1274, retro_tbel_15, retro_tbel_170, retro_tbel_2335, retro_tbel_3341, retro_tbel_3342, retro_tbel_3820, retro_tbel_391, retro_tbel_487, retro_tbel_592, retro_tbel_783, retro_tbel_978,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_192 83.21 99.26
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2. retro_amel_1636 74.31 78.68
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3. retro_amel_1794 72.79 99.26
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Download FASTA sequences of all ENSAMEG00000009765 retrocopies