Parental gene:

PRDX4, ENSCPOG00000004185

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_59:6401775..6425318(+)


>ENSCPOG00000004185
ATGGAGGCGCCACCACGGCCAGAAGCAGTGATGACTCCGGTCCTGGGCTGGAGCCGAAAACTGCTGCCACTGCTGGTCTT
CCTGCTGCACGTTGGGGCTCTGCGGGGCTTGGAGACAGAAGAGAGGCCACGGACCCGCGAAGAGGAGTGCCACTTCTACG
CGGGTGGACAAGTGTACCCGGGGGAGGTGTCCCGGGTATCCGTGGCAGACCACTCCCTGCACCTAAGCAAAGCCAAGATT
TCCAAGCCAGCACCTTACTGGGAAGGAACAGCTGTAATAAATGGAGAATTCAAGGAGCTGAAATTAACTGATTATCGTGG
GAAATACTTGGTTTTTTTCTTCTACCCACTTGATTTCACATTTGTGTGTCCAACTGAAATTATCGCCTTTGGTGATAGAA
TCGAAGAATTCAGAGCCATAAATACTGAAGTGGTAGCATGCTCTGTGGATTCACAGTTCACCCATTTGGCTTGGATTAAT
ACCCCTCGGAGACAGGGAGGACTGGGGTCGATAAAGATCCCACTTCTTTCAGACCTGAACCATCAGATCTCCAAGGACTA
TGGTGTATATCTGGAGGACGCAGGCCACACCCTGAGAGGCCTCTTCATCATTGATGACAAAGGAATCCTGAGGCAGATTA
CTCTGAATGACCTTCCTGTGGGCAGATCAGTGGACGAGACCCTACGTTTGGTTCAGGCGTTCCAGTACACCGACAAACAT
GGAGAAGTCTGCCCTGCTGGCTGGAAACCTGGTAGTGAAACGATAATTCCAGATCCAGCTGGAAAACTGAAGTATTTTGA
CAAGCAAAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 34 .60 RPM
SRP017611_kidney 27 .74 RPM
SRP017611_brain 9 .78 RPM
SRP040447_lung 29 .41 RPM
SRP040447_skeletal_muscle 12 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006165 ortholog_one2one 1 retrogene
retro_btau_439,
Cavia porcellus ENSCPOG00000014137 within_species_paralog 3 retrogenes
retro_cpor_1079, retro_cpor_290, retro_cpor_398,
Equus caballus ENSECAG00000010085 ortholog_one2one 1 retrogene
retro_ecab_576,
Homo sapiens ENSG00000123131 ortholog_one2one 1 retrogene
retro_hsap_3165,
Gorilla gorilla ENSGGOG00000026790 ortholog_one2one 1 retrogene
retro_ggor_1351,
Myotis lucifugus ENSMLUG00000004904 ortholog_one2one 2 retrogenes
retro_mluc_2347, retro_mluc_2619,
Macaca mulatta ENSMMUG00000021366 ortholog_one2one 1 retrogene
retro_mmul_2001,
Tupaia belangeri ENSTBEG00000004454 ortholog_one2one 5 retrogenes
retro_tbel_2164, retro_tbel_2467, retro_tbel_2522, retro_tbel_2811, retro_tbel_2978,
Tarsius syrichta ENSTSYG00000000602 ortholog_one2one 1 retrogene
retro_tsyr_404,
Tursiops truncatus ENSTTRG00000012368 ortholog_one2one 1 retrogene
retro_ttru_547,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_353 51.80 50.74
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Download FASTA sequences of all ENSCPOG00000004185 retrocopies