Parental gene:

HSP90AA1, ENSCPOG00000002015

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_111:2222523..2227210(-)


>ENSCPOG00000002015
ATGCCGGAGGAGACCCAGACCCAGGACCAGCCCATGGAGGAGGAGGAGGTGGAGACCTTCGCCTTCCAGGCGGAGATCGC
CCAGTTGATGTCTCTGATCATCAACACTTTCTACTCGAACAAAGAGATCTTCCTGAGGGAGCTGATTTCCAATTCGTCAG
ATGCCCTGGACAAAATCAGGTATGAAAGCCTGACAGACCCCAGTAAACTCGACTCGGGCAAGGAGCTGCACATAAATCTT
ATTCCCAATAAGCAAGATCGCACCCTCACCATCGTGGATACTGGCATCGGAATGACGAAGGCCGATTTGATCAATAACCT
CGGCACTATAGCTAAGTCGGGAACCAAGGCCTTCATGGAGGCTTTGCAGGCCGGCGCTGACATCTCCATGATTGGCCAGT
TCGGTGTGGGCTTCTACTCTGCGTACCTGGTGGCTGAGAAAGTGACTGTGATCACCAAACATAATGACGATGAACAGTAT
GCCTGGGAATCTTCAGCAGGAGGGTCCTTCACAGTGAGGACTGACACAGGTGAACCTATGGGTCGAGGAACAAAGGTTAT
TCTGCATCTGAAAGAAGACCAAACTGAGTACTTGGAAGAAAGGCGAATTAAAGAGATTGTGAAGAAACATTCTCAGTTCA
TTGGTTATCCCATTACTCTTTTTGTGGAGAAGGAAAGAGATAAAGAAGTGAGTGATGATGAGGCTGAAGAAAAGGAAGAT
AAAGAGGAAGACAAGGAAAAAGAAGAAAAGGAGTCTGATGACAAACCTGAAATAGAAGATGTTGGTTCTGATGAAGAAGA
GGAAGAAAAGAAGGATGGTGACAAGAAGAAGAAAAAGAAGATTAAGGAGAAGTATATTGATCAAGAAGAGCTGAACAAAA
CGAAGCCTATTTGGACCAGAAACCCTGATGATATTACTAACGAGGAGTATGGGGAGTTCTACAAAAGCTTGACCAATGAT
TGGGAGGATCATTTGGCAGTGAAGCATTTTTCCGTGGAAGGGCAGTTGGAATTCAGGGCTCTTCTTTTTGTTCCACGACG
AGCTCCTTTTGATCTATTTGAAAACAGAAAGAAGAAGAATAACATTAAGTTGTACGTGCGCAGAGTCTTCATCATGGATA
ACTGTGAGGAACTGATCCCCGAGTACCTGAATTTCATTAGAGGGGTGGTGGACTCCGAGGATCTCCCTCTAAATATTTCC
AGAGAAATGTTGCAGCAAAGCAAGATCTTGAAAGTCATCAGAAAAAATTTGGTCAAAAAATGCTTAGAATTGTTCACTGA
ACTGGCAGAAGATAAGGAGAACTACAAAAAGTTCTATGAGCAGTTTTCTAAGAATATAAAGCTTGGAATACATGAAGACT
CTCAGAATCGGAAGAAGCTCTCAGAACTGTTACGCTACTACACATCTGCTTCTGGAGATGAGATGGTTTCTCTAAAGGAC
TACTGCACTAGGATGAAGGAGAACCAGAAACACATCTATTACATCACAGGTGAAACCAAAGACCAGGTAGCTAACTCGGC
CTTTGTGGAACGTCTTCGAAAGCATGGCTTAGAAGTGATCTATATGATCGAGCCCATCGATGAGTACTGTGTCCAGCAGC
TGAAAGAATTTGAGGGGAAAACTTTAGTGTCTGTTACCAAAGAGGGCTTGGAACTTCCAGAAGATGAAGAAGAGAAAAAG
AAACAGGAGGAGAAAAAGACAAAGTTTGAAAACCTCTGCAAGATCATGAAAGATATTTTGGAGAAAAAGGTTGAAAAGGT
AGTTGTGTCAAACCGATTGGTGACATCCCCATGCTGTATTGTCACCAGTACATATGGCTGGACAGCAAACATGGAGAGAA
TCATGAAAGCCCAAGCCCTAAGAGACAACTCCACGATGGGGTACATGGCAGCCAAGAAGCACCTGGAGATAAACCCTGAC
CACTCGATCATCGAGACCTTGAGGCAGAAGGCCGAGGCTGATAAGAATGACAAGTCTGTGAAGGATCTGGTCATCTTGCT
GTATGAAACTGCCCTGCTGTCCTCTGGTTTCAGTCTGGAAGACCCTCAGACACATGCAAACAGAATCTACAGGATGATCA
AGCTGGGGCTAGGTATTGATGAGGACGACCCCACTGCTGATGACACCACTGCTGCTGTCAATGAAGAGATGCCGCCCCTT
GAAGGAGATGATGACACATCACGCATGGAAGAAGTTGAC

Library Parental gene expression (RPM)
SRP017611_liver 770 .64 RPM
SRP017611_kidney 973 .07 RPM
SRP017611_brain 1064 .63 RPM
SRP040447_lung 800 .16 RPM
SRP040447_skeletal_muscle 427 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006270 ortholog_one2one 1 retrogene
retro_btau_501,
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Homo sapiens ENSG00000080824 ortholog_one2one 2 retrogenes
retro_hsap_237, retro_hsap_859,
Monodelphis domestica ENSMODG00000013302 ortholog_many2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Mus musculus ENSMUSG00000021270 ortholog_one2one 1 retrogene
retro_mmus_2139,
Nomascus leucogenys ENSNLEG00000015925 ortholog_one2one 3 retrogenes
retro_nleu_714, retro_nleu_822, retro_nleu_854,
Pongo abelii ENSPPYG00000006153 possible_ortholog 1 retrogene
retro_pabe_1760,
Pan troglodytes ENSPTRG00000006736 ortholog_one2one 2 retrogenes
retro_ptro_207, retro_ptro_596,
Rattus norvegicus ENSRNOG00000007219 ortholog_one2one 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1372 87.94 65.62
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Download FASTA sequences of all ENSCPOG00000002015 retrocopies