Parental gene: | ENSCJAG00000033945 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 17:14774100..14778469(-) |
>ENSCJAG00000033945
GGAATTGGAATGGCCAATGCTGACTTGATTAATAACCTTAGTACTATGGCCAAGTCTGGGACCAAAGCATTCATGGAAGC
TTTGCAGGCTGGTGCAGATATCTTTACAATTGGCCAGTTTGGTGTTGGTTTTTATTTTGCTTATTTGGTTGCTGAGAAAG
TAACAGTGATCACCAAACATAAAGATGATGAGCAGTATGCCTGGGAGTCCTCAGCAGGGGGATTATTCACAGTGAGGACA
GACAGTGAACCTATGGGTCGTGGAACCAAGGTTATCCTACCCCTGAAGGAAGACCAAACTGAGTACTTGGAGGAACAAAG
AATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGCTATCCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAG
AAGTCAGTGATGATGAGGAGTCTGAAGATAAACCTGAAATTGAAGATGTTGGTTCTGTTAAGGAAAAGTACATCGATCAA
GAAGAACTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTATGGAGAATTCTACAA
GAGCTTGACCAATGACTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTC
TATTTGTCCCACGACGTGCTCCTTTTGACCTGTTTGAAAACAGAAAGAAAAAGAATAACATCAAGTTGTATGTACGCAGA
GTTTTCATCATGGATAACTGTGAGGAACTAATCCCTGAATATTACATATACTTCATTAGAGGGGTGGTAGACTCAGAGGA
TCTCCCTCTAAATATTTCCCGTGAGATGTTGCAACAAAGCAAGATTTTGAAAGTTATCAGGAAGAATCTGGTCAAAAAAT
GCTTAGAACTCTTCACTGAACTGGCAGAAGATAAAGAGAACTACAAGAAGTTCTATGAGCAGTTCTCTAAAAACATAAAG
CTTGGAATACATGAAGACTCTCAAAATCGGAAGAAGCTTTCAGAGCTGTTGAGATACTACACATCTGCCTCTGGTGATGA
GATGGTATCTCTCAAAGACTACTGCACCAGAATGAAGGAAAACCAGAAACATATCTATTATATCACAGGTGAGACCAAGG
ACCAAGTAGCTAACTCAGCGTTTGTGGAACGTCTTCGAAAGCATGGCTTAGAAGTGATCTATATGATTGAGCCCATTGAT
GAGTACTGTGTCCAACAGCTGAAGGAATTTGAGGGGAAGACTTTAGTGTCAGTCACCAAAGAGGGCTTGGAACTTCCAGA
GGATGAAGAAGAGAAAAAGAAACAGGAAGAGAAGAAAACAAAGTTTGAGAACCTCTGCAAAATCATGAAAGACATACTGG
AGAAAAAGGTTGAAAAGGTGGTTGTGTCAAACCGATTGGTGACGTCTCCATGCTGTATTGTCACAAGCACATATGGCTGG
ACAGCAAACATGGAGAGAATCATGAAAGCTCAAGCCCTGAGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAAACA
CCTGGAGATAAACCCTGACCATTCCATCATCGAGACCTTAAGGCAAAAGGCGGAGGCTGATAAGAACGACAAGTCTGTGA
AGGATCTGGTCATCTTGCTTTATGAAACCGCTCTCCTGTCTTCAGGCTTCAGTCTGGAGGATCCCCAGACACATGCTAAC
AGGATCTACAGGATGATCAAACTTGGTCTAGGTATTGATGAAGATGACCCTACTGCTGATGACACCAGTGCAGCTGTAAC
TGAAGAAATGCCACCCCTCGAAGGAGATGACGACACGTCACGCATGGAAGAAGTAGACTAA
GGAATTGGAATGGCCAATGCTGACTTGATTAATAACCTTAGTACTATGGCCAAGTCTGGGACCAAAGCATTCATGGAAGC
TTTGCAGGCTGGTGCAGATATCTTTACAATTGGCCAGTTTGGTGTTGGTTTTTATTTTGCTTATTTGGTTGCTGAGAAAG
TAACAGTGATCACCAAACATAAAGATGATGAGCAGTATGCCTGGGAGTCCTCAGCAGGGGGATTATTCACAGTGAGGACA
GACAGTGAACCTATGGGTCGTGGAACCAAGGTTATCCTACCCCTGAAGGAAGACCAAACTGAGTACTTGGAGGAACAAAG
AATAAAGGAGATTGTGAAGAAACATTCTCAGTTTATTGGCTATCCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAG
AAGTCAGTGATGATGAGGAGTCTGAAGATAAACCTGAAATTGAAGATGTTGGTTCTGTTAAGGAAAAGTACATCGATCAA
GAAGAACTCAACAAAACAAAGCCCATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTATGGAGAATTCTACAA
GAGCTTGACCAATGACTGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTC
TATTTGTCCCACGACGTGCTCCTTTTGACCTGTTTGAAAACAGAAAGAAAAAGAATAACATCAAGTTGTATGTACGCAGA
GTTTTCATCATGGATAACTGTGAGGAACTAATCCCTGAATATTACATATACTTCATTAGAGGGGTGGTAGACTCAGAGGA
TCTCCCTCTAAATATTTCCCGTGAGATGTTGCAACAAAGCAAGATTTTGAAAGTTATCAGGAAGAATCTGGTCAAAAAAT
GCTTAGAACTCTTCACTGAACTGGCAGAAGATAAAGAGAACTACAAGAAGTTCTATGAGCAGTTCTCTAAAAACATAAAG
CTTGGAATACATGAAGACTCTCAAAATCGGAAGAAGCTTTCAGAGCTGTTGAGATACTACACATCTGCCTCTGGTGATGA
GATGGTATCTCTCAAAGACTACTGCACCAGAATGAAGGAAAACCAGAAACATATCTATTATATCACAGGTGAGACCAAGG
ACCAAGTAGCTAACTCAGCGTTTGTGGAACGTCTTCGAAAGCATGGCTTAGAAGTGATCTATATGATTGAGCCCATTGAT
GAGTACTGTGTCCAACAGCTGAAGGAATTTGAGGGGAAGACTTTAGTGTCAGTCACCAAAGAGGGCTTGGAACTTCCAGA
GGATGAAGAAGAGAAAAAGAAACAGGAAGAGAAGAAAACAAAGTTTGAGAACCTCTGCAAAATCATGAAAGACATACTGG
AGAAAAAGGTTGAAAAGGTGGTTGTGTCAAACCGATTGGTGACGTCTCCATGCTGTATTGTCACAAGCACATATGGCTGG
ACAGCAAACATGGAGAGAATCATGAAAGCTCAAGCCCTGAGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAAACA
CCTGGAGATAAACCCTGACCATTCCATCATCGAGACCTTAAGGCAAAAGGCGGAGGCTGATAAGAACGACAAGTCTGTGA
AGGATCTGGTCATCTTGCTTTATGAAACCGCTCTCCTGTCTTCAGGCTTCAGTCTGGAGGATCCCCAGACACATGCTAAC
AGGATCTACAGGATGATCAAACTTGGTCTAGGTATTGATGAAGATGACCCTACTGCTGATGACACCAGTGCAGCTGTAAC
TGAAGAAATGCCACCCCTCGAAGGAGATGACGACACGTCACGCATGGAAGAAGTAGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 164 .20 RPM |
| SRP051959_skeletal_muscle | 221 .48 RPM |
| SRP051959_lymph_node | 189 .24 RPM |
| SRP051959_lung | 194 .35 RPM |
| SRP051959_liver | 269 .35 RPM |
| SRP051959_kidney | 145 .21 RPM |
| SRP051959_heart | 217 .01 RPM |
| SRP051959_colon | 168 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006270 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000018036 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002015 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000080824 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000011073 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000013302 | ortholog_many2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000021270 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015925 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000006153 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006736 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007219 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_502 | 63.64 | 61.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1818 | 76.81 | 74.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2300 | 64.21 | 74.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2835 | 72.46 | 66.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3514 | 75.65 | 76.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3596 | 74.74 | 63.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_3601 | 73.74 | 77.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_3626 | 77.47 | 53.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000033945 retrocopies