Parental gene:

ENSCPOG00000001236

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_111:2948074..2952711(+)


>ENSCPOG00000001236
ATGTCTGTCAACGTCAACCGCAGCGTTTCAGACCAGTTCTATCGCTACAAGATGCCCCGTCTGATTGCCAAGGTTGAGGG
CAAAGGAAATGGAATCAAGACAGTTATAGTCAACATGGTTGACGTTGCAAAGGCGCTTAATCGGCCTCCAACGTATCCCA
CCAAATACTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGTAAAGAATGACCGTTACATTGTCAATGGATCTCAT
GAGGCGAATAAGCTGCAAGACATGTTGGATGGATTCATTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAAC
AGATCTGCATGTGAATCCGAAGAAGCAAACAATAGGTAATTCTTGTAAAGCCTGTGGCTATCGAGGCATGCTTGACACAC
ATCATAAACTCTGCACATTCATTCTCAAAAACCCACCTGAGAATAGTGACAGTGGTACAGGAAAGAAAGAGAAGGAAAAG
AAAAACAGAAAGGGCAAAGACAAGGAAAATGGTTCAGTATCCAGCAGTGAGACCCCACCACCACCACCCCCGAGTGAAAT
GAGCCCCCCTCCACGGGCCATCGAAGAGGAGGAGGATGATGACTGGGGGGAGGACACAACTGAGGAGGCTCAGAGGCGCA
GGATGGATGAGATCAGCGACCATGCCAAAGTCCTGACGCTCAGTGATGACTTGGAGAGGACCATAGAGGAGCGTGTGAAT
ATCCTGTTCGATTTTGTTAAGAAAAAGAAGGAAGAGGGCATTATTGACTCATCTGACAAAGAAATTGTTGCTGAAGCAGA
AAGACTAGATGTAAAAGCCATGGGCCCTCTTGTTCTGACTGAAGTTCTTTTTAACGAGAAGATTAGAGAACAAATTAAGA
AATACAGGCGCCATTTCCTCAGATTCTGTCACAACAACAAAAAAGCTCAGCGGTACCTTCTTCACGGGTTGGAGTGTGTG
GTGGCGATGCATCAAGCTCAGCTCCTCGCCAAGATCCCACATATCTTGAAGGAGATGTACGACGCAGACCTCTTAGAAGA
GGAGGTCATCATCAGCTGGTCGGAAAAGGCCTCTAAGAAGTATGTTTCAAAGGAACTTGCCAAAGAGATTCGTGTCAAAG
CAGAACCGTTTATTAAGTGGTTGAAGGAGGCAGAGGAAGAATCCTCTGGTGGTGAAGATGAGGAAGAAGATGAAAACATT
GAGGTGGTTTATTCGAAGACTGCCAGTGTGCCGAAAGTTGAGACTGTAAAGTCTGACAACAAGGACGATGACATTGATAT
TGATGCCATT

Library Parental gene expression (RPM)
SRP017611_liver 115 .26 RPM
SRP017611_kidney 172 .00 RPM
SRP017611_brain 159 .32 RPM
SRP040447_lung 150 .62 RPM
SRP040447_skeletal_muscle 167 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000015883 possible_ortholog 1 retrogene
retro_eeur_288,
Echinops telfairi ENSETEG00000015220 possible_ortholog 2 retrogenes
retro_etel_1843, retro_etel_991,
Homo sapiens ENSG00000100664 possible_ortholog 1 retrogene
retro_hsap_4782,
Monodelphis domestica ENSMODG00000013424 ortholog_one2many 1 retrogene
retro_mdom_2000,
Nomascus leucogenys ENSNLEG00000016105 possible_ortholog 1 retrogene
retro_nleu_1102,
Pongo abelii ENSPPYG00000006169 possible_ortholog 1 retrogene
retro_pabe_3722,
Pan troglodytes ENSPTRG00000006753 possible_ortholog 1 retrogene
retro_ptro_3183,
Rattus norvegicus ENSRNOG00000010218 possible_ortholog 2 retrogenes
retro_rnor_1781, retro_rnor_2459,
Tursiops truncatus ENSTTRG00000002384 possible_ortholog 1 retrogene
retro_ttru_400,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_577 63.82 55.81
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Download FASTA sequences of all ENSCPOG00000001236 retrocopies