Parental gene:

NUDCD2, ENSCPOG00000000877

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_17:9995731..10000726(-)


>ENSCPOG00000000877
ATGTCTGCCCCGTTTGAGGAGCGCAGTGGAGTGGTTCCGTGCGGGACGCCGTGGGGCCAGTGGTACCAGACCCTGGAGGA
GGTGTTCATTGAAGTTCAGGTGCCGCCGGGCACTCGAGCGCAGGACATCCAGTGCGGCCTGCAGAGCCGGCATGTGGCGC
TGGCCGTGGGTGGCCGTGAGATCCTAAAGGGCAAACTCTTTGATTCTACAATAGCTGATGAAGGAACATGGACTTTGGAG
GATAGAAAAATGGTCCGCATTGTTCTTACTAAGACAAAGAGAGATGCAGCAAACTGCTGGACTTCTCTTCTAGAATCTGA
ATATGCTGCTGATCCTTGGGTGCAGGACCAAATGCAGAGAAAGCTTACTTTGGAAAGGTTCCAGAAAGAAAATCCTGGTT
TTGACTTCAGTGGAGCAGAAATCTCAGGAAACTATACTAAAGGTGGACCAGATTTCTCGAACCTTGAGAAA

Library Parental gene expression (RPM)
SRP017611_liver 18 .67 RPM
SRP017611_kidney 17 .17 RPM
SRP017611_brain 16 .39 RPM
SRP040447_lung 12 .89 RPM
SRP040447_skeletal_muscle 11 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005270 ortholog_one2one 1 retrogene
retro_amel_535,
Bos taurus ENSBTAG00000014772 ortholog_one2one 1 retrogene
retro_btau_1735,
Callithrix jacchus ENSCJAG00000015367 ortholog_one2one 1 retrogene
retro_cjac_2093,
Dipodomys ordii ENSDORG00000014291 ortholog_one2one 1 retrogene
retro_dord_188,
Macropus eugenii ENSMEUG00000004802 ortholog_one2one 1 retrogene
retro_meug_1673,
Myotis lucifugus ENSMLUG00000001670 ortholog_one2one 1 retrogene
retro_mluc_1154,
Monodelphis domestica ENSMODG00000007641 ortholog_one2one 2 retrogenes
retro_mdom_1058, retro_mdom_2016,
Ornithorhynchus anatinus ENSOANG00000021414 ortholog_one2one 1 retrogene
retro_oana_122,
Oryctolagus cuniculus ENSOCUG00000005783 ortholog_one2one 1 retrogene
retro_ocun_819,
Otolemur garnettii ENSOGAG00000024929 ortholog_one2one 3 retrogenes
retro_ogar_1486, retro_ogar_1696, retro_ogar_482,
Sarcophilus harrisii ENSSHAG00000007551 ortholog_one2one 1 retrogene
retro_shar_559,
Ictidomys tridecemlineatus ENSSTOG00000028665 ortholog_one2one 1 retrogene
retro_itri_1770,
Tupaia belangeri ENSTBEG00000000307 ortholog_one2one 1 retrogene
retro_tbel_507,
Tarsius syrichta ENSTSYG00000008090 ortholog_one2one 1 retrogene
retro_tsyr_1638,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_936 53.33 65.61
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Download FASTA sequences of all ENSCPOG00000000877 retrocopies