Parental gene:

SRP14, ENSCJAG00000020912

Aliases:None
Description:signal recognition particle 14kDa (homologous Alu RNA binding protein) [Source:HGNC Symbol;Acc:11299]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:35940221..35943387(+)


>ENSCJAG00000020912
ATGGTGTTGTTGGAGAGCGAGCAGTTCCTGACGGAGCTGACCAGACTCTTCCAGAAGTGCCGGACGTCGGGCAGCGTTTA
TATCACCTTGAAGAAGTATGATGGTCGAACCAAACCCATTCCAAAGAAAGGTACTGTGGAGGGCTTTGAGCCCGCAGACA
ACAAGTGTCTGTTAAGAGCTACCGATGGGAAAAAGAAGATCAGCACTGTGGTGAGCTCCAAGGAAGTGAATAAGTTTCAG
ATGGCTTATTCAAACCTACTGAGAGCTAACATGGATGGGCTGAAGAAGAGGGACAAAAAGAACAAAACTAAGAAGACCAA
AGCAGCAGCAGCAGCACCAGCAGCAGCACCGCCGCCAGCAGCAGCAGCGGCAGCAGCAACAACAGCAACAGCAGCAGCAG
CAGCACAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 26 .91 RPM
SRP051959_skeletal_muscle 38 .65 RPM
SRP051959_lymph_node 22 .83 RPM
SRP051959_lung 28 .55 RPM
SRP051959_liver 28 .27 RPM
SRP051959_kidney 31 .42 RPM
SRP051959_heart 28 .36 RPM
SRP051959_colon 19 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017231 possible_ortholog 1 retrogene
retro_amel_1566,
Canis familiaris ENSCAFG00000029889 possible_ortholog 2 retrogenes
retro_cfam_210, retro_cfam_40,
Choloepus hoffmanni ENSCHOG00000005321 ortholog_one2many 2 retrogenes
retro_chof_212, retro_chof_2659,
Cavia porcellus ENSCPOG00000008994 ortholog_one2many 2 retrogenes
retro_cpor_1071, retro_cpor_462,
Dasypus novemcinctus ENSDNOG00000011147 ortholog_one2many 3 retrogenes
retro_dnov_1303, retro_dnov_2164, retro_dnov_2599,
Equus caballus ENSECAG00000000319 possible_ortholog 1 retrogene
retro_ecab_817,
Erinaceus europaeus ENSEEUG00000012759 possible_ortholog 1 retrogene
retro_eeur_357,
Echinops telfairi ENSETEG00000011870 ortholog_one2many 1 retrogene
retro_etel_1094,
Felis catus ENSFCAG00000030207 possible_ortholog 2 retrogenes
retro_fcat_1425, retro_fcat_1684,
Homo sapiens ENSG00000140319 ortholog_one2one 3 retrogenes
retro_hsap_1765, retro_hsap_811, retro_hsap_949,
Gorilla gorilla ENSGGOG00000009921 ortholog_one2one 1 retrogene
retro_ggor_665,
Microcebus murinus ENSMICG00000007637 possible_ortholog 1 retrogene
retro_mmur_487,
Myotis lucifugus ENSMLUG00000010531 possible_ortholog 5 retrogenes
retro_mluc_1489, retro_mluc_2284, retro_mluc_2545, retro_mluc_375, retro_mluc_384,
Macaca mulatta ENSMMUG00000016061 ortholog_one2one 4 retrogenes
retro_mmul_1228, retro_mmul_1740, retro_mmul_573, retro_mmul_780,
Monodelphis domestica ENSMODG00000029204 ortholog_one2many 1 retrogene
retro_mdom_1806,
Mustela putorius furo ENSMPUG00000008324 possible_ortholog 1 retrogene
retro_mputfur_376,
Nomascus leucogenys ENSNLEG00000002457 ortholog_one2one 2 retrogenes
retro_nleu_246, retro_nleu_2831,
Otolemur garnettii ENSOGAG00000029070 ortholog_many2many 2 retrogenes
retro_ogar_2839, retro_ogar_40,
Ochotona princeps ENSOPRG00000008599 possible_ortholog 1 retrogene
retro_opri_619,
Pongo abelii ENSPPYG00000006342 ortholog_one2one 3 retrogenes
retro_pabe_1534, retro_pabe_262, retro_pabe_811,
Pan troglodytes ENSPTRG00000006911 ortholog_one2one 3 retrogenes
retro_ptro_1181, retro_ptro_564, retro_ptro_656,
Pteropus vampyrus ENSPVAG00000002186 possible_ortholog 2 retrogenes
retro_pvam_152, retro_pvam_323,
Rattus norvegicus ENSRNOG00000007512 possible_ortholog 1 retrogene
retro_rnor_2702,
Ictidomys tridecemlineatus ENSSTOG00000015627 possible_ortholog 9 retrogenes
retro_itri_1334, retro_itri_1501, retro_itri_1633, retro_itri_382, retro_itri_432, retro_itri_707, retro_itri_710, retro_itri_799, retro_itri_824,
Tupaia belangeri ENSTBEG00000016637 ortholog_one2many 1 retrogene
retro_tbel_196,
Tarsius syrichta ENSTSYG00000009467 ortholog_one2many 4 retrogenes
retro_tsyr_1283, retro_tsyr_1985, retro_tsyr_60, retro_tsyr_73,
Tursiops truncatus ENSTTRG00000000036 possible_ortholog 5 retrogenes
retro_ttru_1185, retro_ttru_1288, retro_ttru_594, retro_ttru_74, retro_ttru_782,
Vicugna pacos ENSVPAG00000010282 possible_ortholog 1 retrogene
retro_vpac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_171 91.94 91.18
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2. retro_cjac_1642 73.27 74.26
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3. retro_cjac_3057 60.38 77.21
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Download FASTA sequences of all ENSCJAG00000020912 retrocopies