RetrogeneDB - Parental gene ENSCJAG00000020612 details

							
>ENSCJAG00000020612
ATGAAGCTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTT

TTATGAGAAGCGTATGGCGACAGAAGTTGCCGCTGACGCTCTGGGTGAAGAATGGAAGGGTTATGTGGTCCGAATCAGTG

GTGGGAATGACAAACAAGGTTTCCCTATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGG

CATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCTAATCTGAG

CGTTCTCAACTTGGTTATTGTAAAAAAAGGAGAGAAGGATATTCCTGGACTAACTGATACCACCGTGCCTCGTCGCCTGG

GGCCTAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGACGTCCGCCAATATGTTGTAAGAAAG

CCCTTAAACAAAGAAGGTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCA

CAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACTAAGAAAAACAAGGAAGAGGCCGCAGAATATGCTAAACTTTTGG

CCAAGAGAATGAAGGAGGCTAAAGAGAAGCGCCAGGAACAAATTGCGAAGAGACGCAGACTTTCGTCTCTGCGAGCTTCT

ACTTCTAAGTCTGAATCCAGTCAGAAATAA

Library	Parental gene expression (RPM)
SRP051959_spleen	199 .90 RPM
SRP051959_skeletal_muscle	119 .83 RPM
SRP051959_lymph_node	238 .71 RPM
SRP051959_lung	153 .13 RPM
SRP051959_liver	136 .42 RPM
SRP051959_kidney	121 .03 RPM
SRP051959_heart	103 .89 RPM
SRP051959_colon	111 .96 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000017634	possible_ortholog	1 retrogene	retro_acar_20,
Ailuropoda melanoleuca	ENSAMEG00000002925	possible_ortholog	14 retrogenes	retro_amel_1040, retro_amel_1250, retro_amel_1384, retro_amel_1526, retro_amel_1646, retro_amel_1676, retro_amel_189, retro_amel_312, retro_amel_334, retro_amel_382, retro_amel_510, retro_amel_568, retro_amel_657, retro_amel_841,
Canis familiaris	ENSCAFG00000001615	ortholog_many2many	4 retrogenes	retro_cfam_184, retro_cfam_1936, retro_cfam_48, retro_cfam_87,
Cavia porcellus	ENSCPOG00000003750	possible_ortholog	4 retrogenes	retro_cpor_1244, retro_cpor_22, retro_cpor_317, retro_cpor_486,
Dasypus novemcinctus	ENSDNOG00000007241	ortholog_one2many	1 retrogene	retro_dnov_1192,
Equus caballus	ENSECAG00000016190	possible_ortholog	5 retrogenes	retro_ecab_175, retro_ecab_312, retro_ecab_603, retro_ecab_771, retro_ecab_861,
Ficedula albicollis	ENSFALG00000003078	possible_ortholog	1 retrogene	retro_falb_24,
Felis catus	ENSFCAG00000002541	possible_ortholog	26 retrogenes	retro_fcat_1082, retro_fcat_1108, retro_fcat_1154, retro_fcat_1262, retro_fcat_1373, retro_fcat_1642, retro_fcat_1679, retro_fcat_1760, retro_fcat_1791, retro_fcat_1934, retro_fcat_1937, retro_fcat_1963, retro_fcat_198, retro_fcat_238, retro_fcat_328, retro_fcat_358, retro_fcat_380, retro_fcat_392, retro_fcat_493, retro_fcat_659, retro_fcat_738, retro_fcat_750, retro_fcat_850, retro_fcat_894, retro_fcat_912, retro_fcat_968,
Gorilla gorilla	ENSGGOG00000002652	possible_ortholog	13 retrogenes	retro_ggor_1430, retro_ggor_1703, retro_ggor_2097, retro_ggor_2358, retro_ggor_2439, retro_ggor_2769, retro_ggor_2863, retro_ggor_2864, retro_ggor_616, retro_ggor_670, retro_ggor_777, retro_ggor_896, retro_ggor_965,
Loxodonta africana	ENSLAFG00000010766	possible_ortholog	4 retrogenes	retro_lafr_1021, retro_lafr_1239, retro_lafr_59, retro_lafr_667,
Microcebus murinus	ENSMICG00000007262	possible_ortholog	24 retrogenes	retro_mmur_1004, retro_mmur_1024, retro_mmur_1048, retro_mmur_1117, retro_mmur_1169, retro_mmur_1298, retro_mmur_1441, retro_mmur_1530, retro_mmur_189, retro_mmur_406, retro_mmur_414, retro_mmur_473, retro_mmur_517, retro_mmur_560, retro_mmur_723, retro_mmur_748, retro_mmur_760, retro_mmur_783, retro_mmur_794, retro_mmur_811, retro_mmur_856, retro_mmur_88, retro_mmur_907, retro_mmur_911,
Macaca mulatta	ENSMMUG00000003412	possible_ortholog	1 retrogene	retro_mmul_263,
Monodelphis domestica	ENSMODG00000004095	possible_ortholog	1 retrogene	retro_mdom_301,
Mus musculus	ENSMUSG00000028495	ortholog_one2many	45 retrogenes	retro_mmus_1010, retro_mmus_1126, retro_mmus_1291, retro_mmus_1357, retro_mmus_1436, retro_mmus_1590, retro_mmus_1663, retro_mmus_1701, retro_mmus_1720, retro_mmus_1966, retro_mmus_1969, retro_mmus_2047, retro_mmus_2068, retro_mmus_2146, retro_mmus_2167, retro_mmus_2171, retro_mmus_2336, retro_mmus_2342, retro_mmus_2367, retro_mmus_2369, retro_mmus_2489, retro_mmus_2546, retro_mmus_2593, retro_mmus_2601, retro_mmus_2625, retro_mmus_2824, retro_mmus_2845, retro_mmus_2946, retro_mmus_3154, retro_mmus_324, retro_mmus_3256, retro_mmus_3338, retro_mmus_3498, retro_mmus_3633, retro_mmus_475, retro_mmus_477, retro_mmus_478, retro_mmus_568, retro_mmus_588, retro_mmus_617, retro_mmus_716, retro_mmus_743, retro_mmus_748, retro_mmus_895, retro_mmus_938,
Ochotona princeps	ENSOPRG00000000751	possible_ortholog	6 retrogenes	retro_opri_1111, retro_opri_1187, retro_opri_248, retro_opri_33, retro_opri_466, retro_opri_865,
Ochotona princeps	ENSOPRG00000012290	possible_ortholog	5 retrogenes	retro_opri_123, retro_opri_642, retro_opri_78, retro_opri_862, retro_opri_895,
Pongo abelii	ENSPPYG00000019193	possible_ortholog	15 retrogenes	retro_pabe_1024, retro_pabe_1625, retro_pabe_2065, retro_pabe_2616, retro_pabe_2617, retro_pabe_2882, retro_pabe_2964, retro_pabe_3282, retro_pabe_3481, retro_pabe_3777, retro_pabe_629, retro_pabe_730, retro_pabe_822, retro_pabe_850, retro_pabe_955,
Rattus norvegicus	ENSRNOG00000049025	possible_ortholog	8 retrogenes	retro_rnor_1008, retro_rnor_1189, retro_rnor_1988, retro_rnor_1990, retro_rnor_2085, retro_rnor_2635, retro_rnor_479, retro_rnor_718,
Sarcophilus harrisii	ENSSHAG00000005486	possible_ortholog	1 retrogene	retro_shar_549,
Sus scrofa	ENSSSCG00000005169	possible_ortholog	6 retrogenes	retro_sscr_187, retro_sscr_425, retro_sscr_645, retro_sscr_856, retro_sscr_940, retro_sscr_983,
Vicugna pacos	ENSVPAG00000006030	ortholog_one2many	10 retrogenes	retro_vpac_217, retro_vpac_228, retro_vpac_288, retro_vpac_297, retro_vpac_392, retro_vpac_407, retro_vpac_412, retro_vpac_438, retro_vpac_618, retro_vpac_70,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_18	98.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_59	99.20	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_180	97.99	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_190	97.99	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_1246	67.19	91.88	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_2982	81.87	96.45	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000020612 retrocopies

Parental gene:	ENSCJAG00000020612
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	1:121085203..121184360(+)

Parental gene:

ENSCJAG00000020612