Parental gene:

ENSCJAG00000020068

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:18380622..18390875(-)


>ENSCJAG00000020068
ATGGCGGAGGGAGATAATCGCAGCTCCAACCTGCTGGCTGCAGAGACTGCAAGTCTGGAAGAACAGCTGCAAGGATGGGG
AGAAGTGATGCTGATGGCTGATAGAGTCCTTCGATGGGAAAGAGCCTGGTTTCCACCTGCCATCATGGGTGTGGTTTCTT
TGGTGTTTCTGATTATCTACTATCTAGACCCATCTGTTCTTTCTGGCGTTTCCTGTTTTGTTATGTTTTTGTGCTTGGCT
GACTACCTCGTTCCCATTCTAGCGCCTAGAATTTTTGGCTCCAATAAATGGACCACTGAACAACAGCAAAGATTCCATGA
AATTTGCAGCAATCTAGTAAAAACTCGACGCAGAGCTGTGGGTTGGTGGAAACGCCTCTTCACACTAAAGGAAGAAAAAC
CTAAGATGTACTTCATGACCATGATCGTTTCCCTTGCTGCGGTTGCTTGGGTGGGACAGCAAGTCCACAACCTGCTTCTT
ACCTACCTCATAGTGACTTCCTTACTATTGCTTCCTGGACTAAACCAACATGGAATCATTTCGAAGTACATTGGAATGGC
CAAAAGGGAGATAAACAAACTTCTCAAACAAAAAGAAAAGAAAAACGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 27 .98 RPM
SRP051959_skeletal_muscle 4 .37 RPM
SRP051959_lymph_node 27 .30 RPM
SRP051959_lung 19 .81 RPM
SRP051959_liver 57 .57 RPM
SRP051959_kidney 37 .94 RPM
SRP051959_heart 9 .33 RPM
SRP051959_colon 35 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018174 possible_ortholog 20 retrogenes
retro_cfam_114, retro_cfam_1204, retro_cfam_1232, retro_cfam_1261, retro_cfam_127, retro_cfam_1301, retro_cfam_1348, retro_cfam_1364, retro_cfam_1525, retro_cfam_1582, retro_cfam_1605, retro_cfam_1642, retro_cfam_1745, retro_cfam_1966, retro_cfam_21, retro_cfam_427, retro_cfam_464, retro_cfam_699, retro_cfam_831, retro_cfam_888,
Choloepus hoffmanni ENSCHOG00000007800 ortholog_one2many 5 retrogenes
retro_chof_1153, retro_chof_1320, retro_chof_2130, retro_chof_2284, retro_chof_270,
Cavia porcellus ENSCPOG00000012603 ortholog_one2many 1 retrogene
retro_cpor_291,
Erinaceus europaeus ENSEEUG00000005434 ortholog_one2many 1 retrogene
retro_eeur_186,
Echinops telfairi ENSETEG00000020152 ortholog_one2many 2 retrogenes
retro_etel_2083, retro_etel_549,
Homo sapiens ENSG00000170540 ortholog_one2many 3 retrogenes
retro_hsap_1393, retro_hsap_559, retro_hsap_902,
Gorilla gorilla ENSGGOG00000002902 ortholog_one2many 3 retrogenes
retro_ggor_1080, retro_ggor_505, retro_ggor_729,
Loxodonta africana ENSLAFG00000018632 ortholog_one2many 2 retrogenes
retro_lafr_420, retro_lafr_741,
Macropus eugenii ENSMEUG00000007896 ortholog_one2many 1 retrogene
retro_meug_1842,
Microcebus murinus ENSMICG00000012246 ortholog_one2many 5 retrogenes
retro_mmur_1383, retro_mmur_1561, retro_mmur_582, retro_mmur_939, retro_mmur_951,
Monodelphis domestica ENSMODG00000005944 ortholog_one2many 1 retrogene
retro_mdom_794,
Nomascus leucogenys ENSNLEG00000005499 ortholog_one2many 2 retrogenes
retro_nleu_1079, retro_nleu_381,
Ornithorhynchus anatinus ENSOANG00000012228 possible_ortholog 2 retrogenes
retro_oana_100, retro_oana_77,
Oryctolagus cuniculus ENSOCUG00000005740 ortholog_one2many 1 retrogene
retro_ocun_1921,
Otolemur garnettii ENSOGAG00000013202 ortholog_one2many 2 retrogenes
retro_ogar_3502, retro_ogar_3504,
Pongo abelii ENSPPYG00000007140 ortholog_one2many 3 retrogenes
retro_pabe_1153, retro_pabe_2798, retro_pabe_777,
Pan troglodytes ENSPTRG00000007824 ortholog_one2many 3 retrogenes
retro_ptro_418, retro_ptro_622, retro_ptro_957,
Pteropus vampyrus ENSPVAG00000002906 ortholog_one2many 1 retrogene
retro_pvam_1337,
Sarcophilus harrisii ENSSHAG00000017346 ortholog_one2many 1 retrogene
retro_shar_691,
Ictidomys tridecemlineatus ENSSTOG00000005816 ortholog_one2many 1 retrogene
retro_itri_1595,
Tupaia belangeri ENSTBEG00000013916 ortholog_one2many 3 retrogenes
retro_tbel_1609, retro_tbel_3046, retro_tbel_3772,
Tarsius syrichta ENSTSYG00000011092 ortholog_one2many 1 retrogene
retro_tsyr_1528,
Tursiops truncatus ENSTTRG00000005171 ortholog_one2many 5 retrogenes
retro_ttru_1610, retro_ttru_1701, retro_ttru_519, retro_ttru_71, retro_ttru_929,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_782 66.87 79.31
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2. retro_cjac_857 72.86 98.03
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Download FASTA sequences of all ENSCJAG00000020068 retrocopies