RetrogeneDB ID:

retro_tbel_3772

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_150806:79989..80398(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARL6IP1
Ensembl ID:ENSTBEG00000013916
Aliases:None
Description:ADP-ribosylation factor-like 6 interacting protein 1 [Source:HGNC Symbol;Acc:697]


Retrocopy-Parental alignment summary:






>retro_tbel_3772
ATGGTGGAGGGAGATAATTGTAGCACCAACCTGCTGGCTGCAGAGACTGTAAGTCTGGAAGAGCAGCTGCAAGGATGAGG
AGAAGTGATGCTGATGGCCGATAAAGTCCTCTGGAGGGAAAGAGCTTGGTTTCCACCTGCCATCATGGGTGTGGTTTCTT
TGGTGTTTCTGATTATCTACTATTTAGATCCATCTGTTCTGCCTGGTGCTTCCTGTTTTGTTATGTTTTTGTGCTTGGCT
GACTACCTGGTTCCCATTCTAGCACCTAGAATTTTTGGCTCCAATAAATGGACCACAGAAAAACAGCAAAGATTCCATGA
AATCTGCAGCAATCTAGTAAAAACTTGATGCAGAGCTGTGGGAATGGTGGAAATGCCTCTTTACACTAAAGGAAGAAAAG
CCTAAAATG

ORF - retro_tbel_3772 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.51 %
Parental protein coverage: 67. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDPSVLSGV
M.EGDN.STNLLAAET.SLEEQLQG.GEVMLMADKVL..ERAWFPPAIMGVVSLVFLIIYYLDPSVL.G.
RetrocopyMVEGDNCSTNLLAAETVSLEEQLQG*GEVMLMADKVLWRERAWFPPAIMGVVSLVFLIIYYLDPSVLPGA
ParentalSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVG-WWKRLFTLKEEKPKM
SCFVMFLCLADYLVPILAPRIFGSNKWTTE.QQRFHEICSNLVKT..RAVG.WWK.LFTLKEEKPKM
RetrocopySCFVMFLCLADYLVPILAPRIFGSNKWTTEKQQRFHEICSNLVKT*CRAVG>WWKCLFTLKEEKPKM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tupaia belangeri was not studied using RNA-Seq expression data.