RetrogeneDB ID:

retro_lafr_741

Retrocopy
location
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_34:7570186..7570603(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARL6IP1
Ensembl ID:ENSLAFG00000018632
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_lafr_741
ATGGCAGAGAGCCATAATCACAGCACCAACATGCTGGCTGCAGAGGCTCCAAGTGTGTAAGAGCAGCGGCAGGGACAGGA
AGAAGTGATGCTGAGGGCTGACAAAGCCTTCTGATGGGAAAGAGCCTGGTTTCTACCTGCCATCATGGAGGTGGCTTCTT
TGGTATTTCTGACGATCTACTATCTAGATCCATCTGTTCTTTCTGGCATTTCCTGTTTTATTATGTTTTTATGCTAGGCT
GACAACCTTGTTCCCATTCTGGCTCCTAGAATTTTTGGCTCCAGTAAATGGACCACCAAGCAACAGCAAAAATTCCATGA
AATTTGAAGCAATCTAGTGAAAACTCGAAGCAGACCTGTGGGCTGGTGAAAATGCTTCTTCACACTAAAGGAAGAAAAGC
CTAAAGTGTACTTCATG

ORF - retro_lafr_741 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.98 %
Parental protein coverage: 68.47 %
Number of stop codons detected: 5
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLTIYYLDPSVLSGV
MAE..N.STN.LAAE..S..EQ.QG..EVML.ADK...WERAWF.PAIM.V.SLVFLTIYYLDPSVLSG.
RetrocopyMAESHNHSTNMLAAEAPSV*EQRQGQEEVMLRADKAF*WERAWFLPAIMEVASLVFLTIYYLDPSVLSGI
ParentalSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFM
SCF.MFLC.AD.LVPILAPRIFGS.KWTT.QQQ.FHEI.SNLVKTR.R.VGW.K..FTLKEEKPK.YFM
RetrocopySCFIMFLC*ADNLVPILAPRIFGSSKWTTKQQQKFHEI*SNLVKTRSRPVGW*KCFFTLKEEKPKVYFM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Loxodonta africana was not studied using RNA-Seq expression data.